Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 0.0e+00 1354.3 705 100.0
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 1.1e-245 853.6 740 60.9
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 2.8e-241 839.0 740 60.0
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 1.6e-233 813.1 740 60.1
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 2.8e-225 785.8 748 57.4
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 5.2e-224 781.6 728 58.1
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 2.6e-223 779.2 705 60.4
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 9.8e-223 777.3 749 57.0
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.9e-222 775.0 705 60.0
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 4.9e-222 775.0 724 58.6
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.6e-220 770.0 742 56.1
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 1.7e-219 766.5 725 58.3
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 3.3e-218 762.3 731 58.4
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 3.6e-217 758.8 721 57.8
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 4.7e-217 758.4 743 55.7
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 8.1e-217 757.7 794 53.5
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 9.9e-215 750.7 718 58.2
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.7e-214 750.0 718 58.1
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 6.4e-214 748.0 732 56.6
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 1.0e-211 740.7 717 55.5
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 1.5e-210 736.9 717 55.4
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 4.3e-210 735.3 662 61.3
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 1.3e-206 723.8 719 56.3
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.3e-206 723.8 726 55.1
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.9e-206 722.6 726 55.0
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 8.7e-203 711.1 729 54.0
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 4.8e-201 705.3 727 51.6
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 5.3e-200 701.8 717 53.1
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 1.3e-198 697.2 727 50.8
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 1.7e-198 696.8 702 56.1
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 2.2e-198 696.4 724 52.8
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.4e-197 693.7 669 57.5
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 2.4e-197 693.0 719 51.0
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 3.0e-195 686.0 720 54.0
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 3.9e-195 685.6 730 51.8
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 1.5e-194 683.7 730 52.2
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.5e-194 682.9 750 52.5
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 7.4e-194 681.4 730 51.8
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 1.6e-193 680.2 739 49.0
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 2.4e-192 676.4 640 53.9
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.6e-188 663.7 723 49.9
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 3.9e-187 659.1 667 53.5
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 6.7e-187 658.3 747 49.7
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 3.3e-186 656.0 710 51.8
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 2.1e-185 653.3 738 48.6
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 3.7e-185 652.5 725 49.2
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 1.1e-184 651.0 729 49.2
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 1.8e-184 650.2 736 48.1
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 6.9e-184 648.3 742 48.4
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 2.2e-182 643.3 720 49.7
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 8.4e-182 641.3 759 49.3
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 4.2e-181 639.0 718 50.6
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 9.3e-181 637.9 733 47.3
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.2e-180 637.5 713 49.9
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.2e-180 637.5 740 48.8
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 7.9e-180 634.8 761 45.9
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 1.3e-179 634.0 730 47.1
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 3.0e-179 632.9 714 49.0
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 6.7e-179 631.7 733 50.1
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 5.7e-178 628.6 651 53.0
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 4.8e-177 625.5 724 48.1
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 1.0e-174 617.8 776 46.5
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 1.7e-174 617.1 815 44.7
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 6.5e-174 615.1 778 45.4
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 2.1e-172 610.1 774 44.8
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 7.9e-172 608.2 717 48.0
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.8e-171 607.1 731 47.1
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 4.8e-169 599.0 720 48.5
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 1.2e-167 594.3 695 46.3
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 2.0e-167 593.6 681 50.1
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 2.6e-167 593.2 681 50.1
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 9.7e-162 574.7 725 44.3
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 2.2e-161 573.5 678 47.3
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 2.8e-161 573.2 587 56.0
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 4.5e-159 565.8 710 45.5
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 2.5e-157 560.1 712 45.4
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 3.9e-155 552.7 735 43.8
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 5.9e-151 538.9 733 43.2
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 6.5e-150 535.4 719 44.2
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 9.1e-144 515.0 652 43.3
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 8.0e-132 475.3 560 46.4
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 8.0e-132 475.3 459 56.6
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.5e-130 471.1 568 48.1
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 6.3e-129 465.7 516 48.6
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 8.6e-126 455.3 574 47.6
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.0e-123 448.4 488 52.7
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 7.8e-119 432.2 441 55.6
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 1.9e-117 427.6 349 63.0
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 1.6e-116 424.5 704 39.3
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 8.9e-115 418.7 589 45.2
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 5.6e-109 399.4 421 52.5
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.8e-107 394.4 345 60.9
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 5.6e-101 372.9 443 48.1
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 5.2e-99 366.3 514 43.0
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 4.4e-98 363.2 690 33.6
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 2.4e-96 357.5 350 56.3
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 5.4e-96 356.3 285 66.3
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 1.2e-95 355.1 469 47.1
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 4.6e-95 353.2 373 53.6
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 6.2e-92 342.8 336 52.4
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 5.2e-91 339.7 348 52.9
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.5e-90 338.2 358 49.7
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 1.4e-88 331.6 343 54.2
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 9.0e-83 312.4 708 29.7
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 2.0e-82 311.2 746 30.2
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 3.7e-76 290.4 869 26.6
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.2e-66 258.8 230 58.7
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 2.6e-66 257.7 241 58.9
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.7e-63 247.7 195 65.6
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 3.4e-58 230.7 599 30.1
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 7.9e-55 219.5 697 29.4
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 3.3e-53 214.2 161 62.7
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 3.7e-52 210.7 162 62.3
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 4.1e-51 207.2 268 46.6
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 8.5e-49 199.5 161 59.6
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 4.2e-48 197.2 890 23.0
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 2.1e-47 194.9 277 45.8
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 3.9e-46 190.7 295 44.1
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 8.5e-41 172.9 141 59.6
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 8.2e-28 129.8 104 55.8
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.2e-26 125.9 98 69.4
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 2.8e-20 104.8 238 36.1
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 4.5e-18 97.4 159 39.0
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 2.0e-13 82.0 323 26.6
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 5.7e-13 80.5 181 30.4
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 3.7e-12 77.8 462 23.2
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 3.3e-08 64.7 99 40.4
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 7.3e-08 63.5 166 32.5
RcHm_v2.0_Chr6g0290011 Rosa chinensis HOM05D005820 ORTHO05D007116 7.3e-08 63.5 35 74.3
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 3.6e-07 61.2 35 77.1
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 8.0e-07 60.1 55 52.7


User provided reference genes

Program Settings