Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2169 Cannabis sativa HOM05D009769 ORTHO05D010823 1.1e-300 1035.8 517 100.0
CANSAT25G1172 Cannabis sativa HOM05D009769 ORTHO05D010823 1.6e-150 537.0 299 90.6
CANSAT64G0311 Cannabis sativa HOM05D009769 ORTHO05D010823 5.9e-116 422.2 433 60.0
CANSAT25G1981 Cannabis sativa HOM05D009769 ORTHO05D010823 1.5e-90 337.8 185 93.0
CANSAT78G0590 Cannabis sativa HOM05D009769 ORTHO05D000898 1.2e-79 301.6 229 73.4
CANSAT21G2496 Cannabis sativa HOM05D009769 ORTHO05D010823 2.2e-78 297.4 631 34.4
CANSAT78G1112 Cannabis sativa HOM05D009769 ORTHO05D010823 8.9e-64 248.8 129 100.0
CANSAT35G0470 Cannabis sativa HOM05D029669 ORTHO05D010823 1.3e-54 218.4 105 100.0
CANSAT56G2685 Cannabis sativa HOM05D009769 ORTHO05D010823 6.9e-40 169.5 103 82.5
CANSAT78G0023 Cannabis sativa HOM05D009769 ORTHO05D010823 2.5e-37 161.0 399 33.1
CANSAT78G1808 Cannabis sativa HOM05D009769 ORTHO05D010823 4.2e-37 160.2 183 56.3
CANSAT80G1287 Cannabis sativa HOM05D009769 ORTHO05D010823 5.5e-37 159.8 110 65.5
CANSAT01G0411 Cannabis sativa HOM05D009769 ORTHO05D010823 1.0e-30 139.0 208 47.1
CANSAT25G3518 Cannabis sativa HOM05D009769 ORTHO05D010823 4.2e-29 133.7 342 29.8
CANSAT80G2744 Cannabis sativa HOM05D009769 ORTHO05D010823 1.8e-24 118.2 122 57.4
CANSAT21G1911 Cannabis sativa HOM05D009769 ORTHO05D010823 2.1e-20 104.8 123 56.1
FAN20G1880 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.7e-17 94.0 210 30.0
FAN27G1870 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.7e-17 94.0 210 30.0
CANSAT25G0179 Cannabis sativa HOM05D009769 ORTHO05D010823 2.4e-16 91.3 244 31.6
Prupe.7G070100 Prunus persica HOM05D004096 ORTHO05D000898 4.1e-16 90.5 156 31.4
FvH4_2g09911 Fragaria vesca HOM05D004096 ORTHO05D000898 5.3e-16 90.1 169 32.0
FAN24G1944 Fragaria x ananassa HOM05D004096 ORTHO05D000898 5.3e-16 90.1 169 32.0
FAN12G1875 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.2e-15 89.0 167 31.1
FAN18G0847 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.2e-15 89.0 121 33.9
RcHm_v2.0_Chr6g0266671 Rosa chinensis HOM05D004096 ORTHO05D000898 2.0e-15 88.2 121 36.4
RcHm_v2.0_Chr6g0266661 Rosa chinensis HOM05D007993 ORTHO05D000898 7.7e-15 86.3 130 36.9
FvH4_4g05321 Fragaria vesca HOM05D004096 ORTHO05D000898 1.1e-13 82.4 479 22.1
Ciclev10023350m.g Citrus clementina HOM05D004096 ORTHO05D000898 5.5e-13 80.1 120 34.2
FvH4_7g31230 Fragaria vesca HOM05D000045 ORTHO05D000067 5.5e-13 80.1 153 30.7
FAN09G2456 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.6e-12 78.6 121 34.7
FvH4_7g05770 Fragaria vesca HOM05D004096 ORTHO05D000898 2.7e-12 77.8 116 36.2
Dinv14442 Davidia involucrata HOM05D008396 ORTHO05D000898 4.7e-12 77.0 219 26.9
FvH4_5g19752 Fragaria vesca HOM05D004096 ORTHO05D000898 4.7e-12 77.0 116 36.2
FvH4_7g12251 Fragaria vesca HOM05D004096 ORTHO05D000898 7.9e-12 76.3 116 36.2
FvH4_7g03531 Fragaria vesca HOM05D007993 ORTHO05D000898 1.8e-11 75.1 121 37.2
Atru.chr10.1446 Acer truncatum HOM05D004096 ORTHO05D000898 2.3e-11 74.7 93 38.7
CANSAT35G0161 Cannabis sativa HOM05D009769 ORTHO05D010823 6.7e-11 73.2 88 55.7
FAN05G1382 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.7e-11 73.2 124 31.5
FAN16G2434 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.7e-11 73.2 124 31.5
FAN22G0991 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.7e-11 73.2 124 31.5
FAN25G0030 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.7e-11 73.2 124 31.5
CANSAT54G1636 Cannabis sativa HOM05D009769 ORTHO05D010823 4.4e-10 70.5 88 54.5
FvH4_3g26550 Fragaria vesca HOM05D007993 ORTHO05D000898 5.7e-10 70.1 127 34.6
Atru.chr5.2180 Acer truncatum HOM05D004096 ORTHO05D000898 7.4e-10 69.7 121 30.6
FAN13G0573 Fragaria x ananassa HOM05D011469 ORTHO05D014217 7.4e-10 69.7 188 26.6
FAN18G3521 Fragaria x ananassa HOM05D011469 ORTHO05D014217 7.4e-10 69.7 188 26.6
CANSAT54G1089 Cannabis sativa HOM05D000003 ORTHO05D000004 9.7e-10 69.3 119 39.5
CANSAT64G2369 Cannabis sativa HOM05D014696 ORTHO05D022147 9.7e-10 69.3 130 30.0
FAN03G1966 Fragaria x ananassa HOM05D004096 ORTHO05D000898 9.7e-10 69.3 119 31.1
FAN10G0034 Fragaria x ananassa HOM05D004096 ORTHO05D000898 9.7e-10 69.3 116 34.5
FAN22G2114 Fragaria x ananassa HOM05D004096 ORTHO05D000898 9.7e-10 69.3 116 34.5
RcHm_v2.0_Chr2g0155611 Rosa chinensis HOM05D010969 ORTHO05D015656 1.3e-09 68.9 138 31.2
FAN20G2217 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.7e-09 68.6 114 30.7
RcHm_v2.0_Chr3g0485951 Rosa chinensis HOM05D004096 ORTHO05D000898 1.7e-09 68.6 122 31.1
CANSAT54G0051 Cannabis sativa HOM05D009769 ORTHO05D010823 2.2e-09 68.2 106 37.7
FAN15G0550 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.2e-09 68.2 124 30.6
FAN10G4083 Fragaria x ananassa HOM05D010969 ORTHO05D015656 4.8e-09 67.0 189 28.0
RcHm_v2.0_Chr3g0478081 Rosa chinensis HOM05D004096 ORTHO05D000898 6.3e-09 66.6 122 31.1
FAN06G0315 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.8e-08 65.1 118 30.5
FAN27G2446 Fragaria x ananassa HOM05D008674 ORTHO05D000898 1.8e-08 65.1 121 33.1
FAN09G2500 Fragaria x ananassa HOM05D008674 ORTHO05D000898 2.4e-08 64.7 121 33.1
FAN25G2264 Fragaria x ananassa HOM05D008674 ORTHO05D000898 2.4e-08 64.7 121 33.1
FAN28G0955 Fragaria x ananassa HOM05D008674 ORTHO05D000898 2.4e-08 64.7 113 32.7
FAN02G1156 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.1e-08 64.3 117 31.6
FAN08G3199 Fragaria x ananassa HOM05D008674 ORTHO05D000898 3.1e-08 64.3 121 32.2
FAN12G1044 Fragaria x ananassa HOM05D007993 ORTHO05D000898 3.1e-08 64.3 151 28.5
FAN13G2044 Fragaria x ananassa HOM05D004096 ORTHO05D010213 3.1e-08 64.3 117 31.6
FAN13G3102 Fragaria x ananassa HOM05D004096 ORTHO05D010213 3.1e-08 64.3 117 31.6
FAN18G1768 Fragaria x ananassa HOM05D004096 ORTHO05D010213 3.1e-08 64.3 117 31.6
FAN18G2232 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.1e-08 64.3 117 31.6
FAN20G2401 Fragaria x ananassa HOM05D007993 ORTHO05D000898 3.1e-08 64.3 114 30.7
FAN28G1999 Fragaria x ananassa HOM05D004096 ORTHO05D010213 3.1e-08 64.3 117 31.6
CANSAT25G1274 Cannabis sativa HOM05D009769 ORTHO05D010823 4.1e-08 63.9 97 45.4
FvH4_5g30680 Fragaria vesca HOM05D007993 ORTHO05D000898 4.1e-08 63.9 118 31.4
FAN03G2392 Fragaria x ananassa HOM05D007993 ORTHO05D000898 4.1e-08 63.9 220 23.2
FAN04G2605 Fragaria x ananassa HOM05D008674 ORTHO05D000898 4.1e-08 63.9 121 32.2
FAN06G1622 Fragaria x ananassa HOM05D007993 ORTHO05D000898 4.1e-08 63.9 118 31.4
FAN08G1236 Fragaria x ananassa HOM05D007993 ORTHO05D000898 4.1e-08 63.9 221 24.9
FAN16G3666 Fragaria x ananassa HOM05D008674 ORTHO05D000898 4.1e-08 63.9 121 33.1
FvH4_1g29141 Fragaria vesca HOM05D007993 ORTHO05D000898 5.3e-08 63.5 221 24.9
FAN16G0074 Fragaria x ananassa HOM05D007993 ORTHO05D000898 5.3e-08 63.5 221 24.4
FAN17G1842 Fragaria x ananassa HOM05D008674 ORTHO05D000898 5.3e-08 63.5 121 32.2
FAN26G1477 Fragaria x ananassa HOM05D004096 ORTHO05D010213 5.3e-08 63.5 116 31.9
FAN28G0966 Fragaria x ananassa HOM05D007993 ORTHO05D000898 5.3e-08 63.5 221 24.9
FvH4_4g28760 Fragaria vesca HOM05D007993 ORTHO05D000898 7.0e-08 63.2 221 24.4
FAN09G4582 Fragaria x ananassa HOM05D007993 ORTHO05D000898 7.0e-08 63.2 218 24.3
FAN20G0366 Fragaria x ananassa HOM05D004096 ORTHO05D000898 7.0e-08 63.2 125 28.8
FvH4_2g25151 Fragaria vesca HOM05D004096 ORTHO05D010213 9.1e-08 62.8 114 28.1
FAN13G2291 Fragaria x ananassa HOM05D004096 ORTHO05D000898 9.1e-08 62.8 114 29.8
FAN17G0441 Fragaria x ananassa HOM05D004096 ORTHO05D010213 9.1e-08 62.8 119 29.4
FAN19G1351 Fragaria x ananassa HOM05D007993 ORTHO05D000898 9.1e-08 62.8 110 30.9
FAN20G2128 Fragaria x ananassa HOM05D004096 ORTHO05D000898 9.1e-08 62.8 187 25.7
CANSAT78G1568 Cannabis sativa HOM05D009769 ORTHO05D010823 1.2e-07 62.4 104 36.5
FvH4_4g15990 Fragaria vesca HOM05D010969 ORTHO05D015656 1.5e-07 62.0 118 30.5
FAN04G2812 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.5e-07 62.0 236 25.0
Atru.chr10.463 Acer truncatum HOM05D007993 ORTHO05D000898 2.0e-07 61.6 123 30.9
Ciclev10017925m.g Citrus clementina HOM05D004096 ORTHO05D000898 2.0e-07 61.6 109 29.4
FAN13G3014 Fragaria x ananassa HOM05D007993 ORTHO05D000898 2.0e-07 61.6 121 31.4
FAN03G2350 Fragaria x ananassa HOM05D007993 ORTHO05D000898 2.6e-07 61.2 216 24.1
FAN10G0790 Fragaria x ananassa HOM05D010969 ORTHO05D015656 2.6e-07 61.2 189 29.1
FAN13G0792 Fragaria x ananassa HOM05D017852 ORTHO05D000898 2.6e-07 61.2 231 25.5
FAN14G2992 Fragaria x ananassa HOM05D004096 ORTHO05D010213 2.6e-07 61.2 117 29.9
FAN23G0656 Fragaria x ananassa HOM05D004096 ORTHO05D010213 2.6e-07 61.2 117 29.9
Atru.chr4.885 Acer truncatum HOM05D007993 ORTHO05D000898 3.5e-07 60.8 123 30.1
FAN17G2177 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.5e-07 60.8 117 29.9
FAN24G2359 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.5e-07 60.8 113 31.0
Prupe.6G153700 Prunus persica HOM05D004096 ORTHO05D000898 3.5e-07 60.8 92 35.9
FAN25G1629 Fragaria x ananassa HOM05D004096 ORTHO05D000898 4.5e-07 60.5 113 31.0
FAN27G2741 Fragaria x ananassa HOM05D007993 ORTHO05D000898 4.5e-07 60.5 221 24.9
Peaxi162Scf00104g01921 Petunia axillaris HOM05D007651 ORTHO05D000898 4.5e-07 60.5 125 34.4
Solyc03g043600.3 Solanum lycopersicum HOM05D007651 ORTHO05D000898 4.5e-07 60.5 122 34.4
Sopen03g007480 Solanum pennellii HOM05D007651 ORTHO05D000898 4.5e-07 60.5 122 34.4
PGSC0003DMG400016690 Solanum tuberosum HOM05D007651 ORTHO05D000898 4.5e-07 60.5 122 34.4
FvH4_1g25481 Fragaria vesca HOM05D004096 ORTHO05D010213 5.9e-07 60.1 114 27.2
FAN07G1300 Fragaria x ananassa HOM05D007993 ORTHO05D000898 5.9e-07 60.1 217 24.4
CANSAT56G3495 Cannabis sativa HOM05D014696 ORTHO05D022147 7.7e-07 59.7 145 28.3
FvH4_4g03327 Fragaria vesca HOM05D011469 ORTHO05D014217 1.0e-06 59.3 115 29.6
FvH4_6g40313 Fragaria vesca HOM05D011469 ORTHO05D014217 1.0e-06 59.3 115 29.6
FvH4_c6g00030 Fragaria vesca HOM05D011469 ORTHO05D014217 1.0e-06 59.3 115 29.6
Lsat_1_v5_gn_2_81300 Lactuca sativa HOM05D007651 ORTHO05D000898 1.0e-06 59.3 117 32.5
Nitab4.5_0000625g0020 Nicotiana tabacum HOM05D007651 ORTHO05D001192 1.0e-06 59.3 122 33.6
Nitab4.5_0000901g0120 Nicotiana tabacum HOM05D007651 ORTHO05D001192 1.0e-06 59.3 122 33.6
CAN.G11.14 Capsicum annuum HOM05D007651 ORTHO05D001192 1.3e-06 58.9 122 34.4
FAN28G2534 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.3e-06 58.9 108 30.6
FAN09G4395 Fragaria x ananassa HOM05D004096 ORTHO05D025475 1.7e-06 58.5 113 30.1
Glyma.10G201800 Glycine max HOM05D007651 ORTHO05D000898 1.7e-06 58.5 121 29.8
FAN05G2523 Fragaria x ananassa HOM05D007993 ORTHO05D000898 2.2e-06 58.2 218 24.3
FAN09G4098 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.2e-06 58.2 113 30.1
THA.LOC104805598 Tarenaya hassleriana HOM05D007651 ORTHO05D000898 2.2e-06 58.2 136 29.4
Atru.chr1.1775 Acer truncatum HOM05D007651 ORTHO05D001192 2.9e-06 57.8 121 30.6
FvH4_2g27901 Fragaria vesca HOM05D004096 ORTHO05D000898 2.9e-06 57.8 113 30.1
FAN14G0071 Fragaria x ananassa HOM05D007993 ORTHO05D000898 5.0e-06 57.0 221 23.5
FAN21G3088 Fragaria x ananassa HOM05D004096 ORTHO05D000898 5.0e-06 57.0 99 30.3
RcHm_v2.0_Chr6g0281911 Rosa chinensis HOM05D004096 ORTHO05D000898 5.0e-06 57.0 124 26.6
FAN12G2805 Fragaria x ananassa HOM05D007993 ORTHO05D000898 6.5e-06 56.6 221 23.5
Manes.03G097100 Manihot esculenta HOM05D007651 ORTHO05D001192 6.5e-06 56.6 116 31.9
FvH4_1g25490 Fragaria vesca HOM05D011469 ORTHO05D014217 8.5e-06 56.2 115 28.7


User provided reference genes

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