Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 5.5e-116 421.0 216 100.0
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 1.4e-98 363.2 217 85.3
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 4.0e-98 361.7 217 83.4
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 5.2e-98 361.3 217 83.4
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.1e-97 360.1 219 84.5
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 1.5e-97 359.8 219 84.0
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 1.5e-97 359.8 219 84.5
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 5.7e-97 357.8 218 83.9
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 9.7e-97 357.1 218 84.9
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 1.7e-96 356.3 218 83.9
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 2.2e-96 355.9 218 84.4
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.2e-96 355.9 218 84.4
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.2e-96 355.9 218 84.4
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 8.2e-96 354.0 218 83.9
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 8.2e-96 354.0 218 84.9
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.8e-95 352.8 217 82.5
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 1.8e-95 352.8 219 83.1
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.4e-95 352.4 220 81.8
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 3.1e-95 352.1 218 82.6
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 3.1e-95 352.1 216 83.3
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 5.3e-95 351.3 219 79.9
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 5.3e-95 351.3 219 83.1
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 5.3e-95 351.3 219 83.1
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 5.3e-95 351.3 220 81.4
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 5.3e-95 351.3 218 83.5
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 7.0e-95 350.9 219 83.6
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.6e-94 349.7 220 82.3
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 80.4
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 80.4
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 80.4
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 4.5e-94 348.2 219 80.8
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 4.5e-94 348.2 220 81.8
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 5.9e-94 347.8 217 80.2
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.9e-94 347.8 220 82.7
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 7.7e-94 347.4 217 80.6
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 7.7e-94 347.4 218 82.1
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 1.0e-93 347.1 221 80.5
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.7e-93 346.3 219 79.9
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.7e-93 346.3 217 79.3
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 2.2e-93 345.9 216 80.6
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 2.2e-93 345.9 220 79.5
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 2.2e-93 345.9 219 79.9
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.2e-93 345.9 218 82.1
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.9e-93 345.5 220 82.3
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 2.9e-93 345.5 218 80.7
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 2.9e-93 345.5 218 80.7
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 5.0e-93 344.7 218 79.8
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 5.0e-93 344.7 216 80.1
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 5.0e-93 344.7 221 81.4
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 8.5e-93 344.0 219 79.0
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 8.5e-93 344.0 219 79.5
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 8.5e-93 344.0 219 79.5
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 8.5e-93 344.0 215 79.1
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 8.5e-93 344.0 215 79.1
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 8.5e-93 344.0 216 78.2
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 79.9
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 1.1e-92 343.6 213 81.7
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.1e-92 343.6 217 80.6
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 80.0
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 81.3
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 1.5e-92 343.2 219 79.9
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 1.9e-92 342.8 219 79.5
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 1.9e-92 342.8 219 79.5
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 79.4
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.9e-92 342.8 232 78.4
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 83.2
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 2.5e-92 342.4 219 79.5
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 2.5e-92 342.4 219 82.2
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 2.5e-92 342.4 213 81.7
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 2.5e-92 342.4 217 79.7
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 2.5e-92 342.4 217 78.8
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 3.2e-92 342.0 219 79.9
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 5.5e-92 341.3 219 79.5
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 5.5e-92 341.3 219 80.4
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 7.2e-92 340.9 219 79.5
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 7.2e-92 340.9 219 79.9
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 7.2e-92 340.9 219 81.3
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 9.4e-92 340.5 219 78.5
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 9.4e-92 340.5 219 80.4
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 9.4e-92 340.5 219 80.4
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 9.4e-92 340.5 220 81.4
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 1.2e-91 340.1 219 78.5
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.2e-91 340.1 217 78.8
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.6e-91 339.7 218 78.0
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 2.1e-91 339.3 219 80.8
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.7e-91 339.0 218 82.6
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.7e-91 339.0 221 77.8
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 3.6e-91 338.6 218 77.5
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 3.6e-91 338.6 218 77.5
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 3.6e-91 338.6 218 78.0
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 4.7e-91 338.2 214 82.2
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.7e-91 338.2 219 81.7
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 8.0e-91 337.4 218 77.5
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.0e-90 337.0 217 77.4
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.8e-90 336.3 218 78.4
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 3.0e-90 335.5 217 81.6
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 3.0e-90 335.5 217 78.8
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 5.2e-90 334.7 217 77.4
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 5.2e-90 334.7 220 79.5
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 1.5e-89 333.2 219 79.5
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 1.5e-89 333.2 215 79.1
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 2.0e-89 332.8 219 79.9
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 2.0e-89 332.8 219 79.9
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.6e-89 332.4 219 78.5
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 2.6e-89 332.4 217 78.8
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 3.4e-89 332.0 219 76.7
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 3.4e-89 332.0 219 79.0
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 3.4e-89 332.0 219 79.0
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 3.4e-89 332.0 221 76.5
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 5.7e-89 331.3 221 77.8
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.7e-89 331.3 217 75.6
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 7.5e-89 330.9 219 78.1
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 9.8e-89 330.5 219 79.0
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 6.3e-88 327.8 219 77.2
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 3.1e-87 325.5 210 78.6
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 3.1e-87 325.5 216 75.0
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 4.1e-87 325.1 220 78.6
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 5.4e-87 324.7 220 76.8
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 9.1e-87 323.9 217 75.6
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 4.4e-81 305.1 211 74.4
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 2.8e-80 302.4 216 71.8
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 8.3e-80 300.8 224 71.9
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 9.2e-79 297.4 162 87.0
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 9.2e-79 297.4 213 73.2
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.1e-75 286.2 165 83.0
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.3e-74 282.7 194 74.2
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 6.8e-74 281.2 192 71.4
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 8.3e-72 274.2 162 82.7
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 3.5e-70 268.9 167 77.2
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.5e-70 268.9 179 73.2
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 5.0e-69 265.0 169 75.1
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 8.6e-69 264.2 200 68.5
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 3.3e-60 235.7 215 60.0
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 6.2e-59 231.5 217 60.8
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 9.2e-55 217.6 219 57.1
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 1.3e-48 197.2 217 52.1
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 6.4e-48 194.9 193 56.0
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 6.0e-46 188.3 174 56.9
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.1e-44 184.1 149 61.1
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 2.1e-43 179.9 127 70.1
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.9e-39 166.8 135 71.9
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 4.8e-27 125.6 105 71.4
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.0e-13 81.3 56 71.4
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.0e-13 81.3 56 71.4
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 2.7e-06 56.6 39 69.2


User provided reference genes

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