Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 5.8e-89 330.9 169 100.0
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 5.0e-80 301.2 169 88.2
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 6.5e-80 300.8 169 88.8
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 6.5e-80 300.8 166 89.8
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 6.5e-80 300.8 166 88.6
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.5e-79 298.9 166 89.2
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.5e-79 298.9 169 87.6
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.5e-79 298.9 169 87.6
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 87.6
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 88.8
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 9.4e-79 297.0 169 88.2
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 9.4e-79 297.0 169 86.4
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 9.4e-79 297.0 166 88.0
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.4e-79 297.0 166 88.0
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.4e-79 297.0 166 88.0
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 9.4e-79 297.0 169 87.0
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 9.4e-79 297.0 166 88.0
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 87.0
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-78 296.2 166 88.0
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.1e-78 295.8 169 86.4
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 2.1e-78 295.8 169 86.4
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.7e-78 295.4 169 86.4
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 4.6e-78 294.7 169 85.2
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 6.1e-78 294.3 168 87.5
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 6.1e-78 294.3 169 86.4
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 7.9e-78 293.9 169 87.0
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.0e-77 293.5 168 86.3
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.4e-77 293.1 166 84.9
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.4e-77 293.1 166 87.3
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 87.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 85.2
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 2.3e-77 292.4 166 86.1
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 84.6
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 85.8
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 3.9e-77 291.6 161 89.4
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 3.9e-77 291.6 169 85.2
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 84.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.1e-76 290.0 168 85.7
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.1e-76 290.0 166 86.1
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 84.0
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 2.0e-76 289.3 169 84.0
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 82.2
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 84.6
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 5.7e-76 287.7 169 82.2
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 5.7e-76 287.7 166 86.7
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 7.4e-76 287.3 169 85.2
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 9.7e-76 287.0 168 85.1
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.3e-75 286.6 169 82.8
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.3e-75 286.6 168 85.1
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 2.8e-75 285.4 186 79.0
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.8e-75 284.6 183 79.2
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 6.3e-75 284.3 169 83.4
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.3e-75 284.3 183 79.2
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.3e-75 284.3 183 79.2
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 6.3e-75 284.3 169 83.4
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.1e-74 283.5 169 83.4
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.8e-74 282.7 192 77.1
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 81.1
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 81.7
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 81.1
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 81.1
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 80.5
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 9.1e-74 280.4 169 80.5
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.2e-73 280.0 169 80.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.6e-73 278.9 169 79.9
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 81.7
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 5.9e-73 277.7 207 70.5
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 7.7e-73 277.3 169 82.8
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.0e-72 276.9 169 80.5
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.0e-72 276.9 182 76.4
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.3e-72 276.6 169 83.4
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.7e-72 276.2 169 80.5
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 2.2e-72 275.8 169 79.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.9e-72 275.4 149 89.9
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.8e-72 275.0 167 83.8
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 6.5e-72 274.2 169 78.1
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.1e-71 273.5 197 70.6
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.4e-71 273.1 169 79.3
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.9e-71 272.7 169 79.3
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.9e-71 272.7 166 80.1
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.9e-71 272.7 169 80.5
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 2.5e-71 272.3 149 89.9
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 4.2e-71 271.6 169 75.1
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 5.5e-71 271.2 150 87.3
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.2e-70 270.0 161 82.0
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.6e-70 269.6 169 78.1
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.7e-70 268.9 169 78.7
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.7e-70 268.9 149 87.2
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 7.9e-70 267.3 149 87.2
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.0e-69 266.9 169 76.3
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.0e-69 265.4 169 76.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.0e-69 265.4 169 76.9
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 3.0e-69 265.4 148 85.8
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 3.9e-69 265.0 169 78.1
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 3.9e-69 265.0 169 78.1
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 3.9e-69 265.0 149 83.9
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 6.7e-69 264.2 169 75.1
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.6e-68 262.3 143 88.8
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 5.7e-68 261.2 166 76.5
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 9.7e-68 260.4 214 65.9
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.7e-67 259.6 145 86.9
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 2.8e-67 258.8 165 78.8
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 3.7e-67 258.5 150 83.3
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.8e-67 258.1 147 84.4
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.8e-67 258.1 158 82.9
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.4e-66 255.8 169 75.7
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 4.1e-66 255.0 152 83.6
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.1e-66 255.0 158 82.3
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-65 253.4 177 76.3
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.6e-65 252.3 166 72.9
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.6e-65 252.3 163 80.4
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.5e-64 247.7 153 81.0
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.1e-63 246.9 239 58.6
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 7.2e-63 244.2 149 79.2
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 6.1e-62 241.1 163 74.8
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 5.7e-60 234.6 149 76.5
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-60 234.6 156 78.8
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 5.7e-60 234.6 168 72.0
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.2e-59 232.6 167 71.3
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 2.8e-59 232.3 126 85.7
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.4e-58 229.9 124 87.9
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 7.7e-57 224.2 170 71.2
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.2e-56 222.6 123 84.6
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 2.9e-56 222.2 169 69.8
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 8.5e-56 220.7 189 59.3
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.9e-55 219.5 146 75.3
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.5e-55 219.2 127 88.2
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 4.7e-54 214.9 124 87.9
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 8.0e-54 214.2 131 80.9
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-53 213.8 166 69.3
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.4e-53 213.4 157 68.8
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-52 210.3 121 88.4
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-52 209.9 121 87.6
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-52 209.9 121 87.6
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 2.6e-52 209.1 162 67.9
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-52 209.1 123 87.0
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 3.3e-52 208.8 121 86.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 8.3e-51 204.1 148 73.0
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 5.9e-49 198.0 124 83.1
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.7e-48 196.4 134 72.4
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.9e-47 193.0 141 71.6
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.7e-46 189.1 152 71.1
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 2.7e-41 172.6 106 83.0
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 3.3e-39 165.6 90 91.1
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.0e-37 160.6 90 78.9
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.8e-37 157.9 94 89.4
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 4.5e-33 145.2 103 68.0
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 5.9e-33 144.8 83 89.2
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.4e-28 128.6 87 71.3
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.3e-27 127.1 93 68.8
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.4e-26 121.7 73 87.7
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 7.0e-26 121.3 103 64.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.5e-25 119.0 82 72.0
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.8e-21 106.7 78 62.8
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.3e-21 106.3 75 70.7
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.9e-21 104.4 74 68.9
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.2e-19 99.8 156 39.1
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-17 94.0 64 71.9
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-17 93.2 65 73.8
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.1e-17 93.2 130 40.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-15 86.3 49 89.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-15 86.3 49 89.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.6e-12 76.3 108 48.1
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 7.5e-12 74.7 168 32.1
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.7e-11 72.4 44 70.5
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.1e-10 68.2 38 76.3


User provided reference genes

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