Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 2.1e-216 755.4 371 100.0
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 1.7e-136 490.0 362 66.3
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 1.4e-135 486.9 353 66.6
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.3e-135 485.0 353 66.3
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 6.9e-135 484.6 358 65.9
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 4.5e-134 481.9 352 64.5
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.7e-133 479.9 375 64.0
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 1.1e-132 477.2 342 66.7
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 2.5e-132 476.1 325 69.5
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 7.9e-131 471.1 340 65.3
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 1.5e-129 466.8 335 67.5
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 5.7e-129 464.9 343 63.8
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 3.7e-128 462.2 355 62.0
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 1.1e-127 460.7 356 63.2
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 1.4e-127 460.3 342 65.5
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 3.1e-127 459.1 347 64.3
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 4.1e-127 458.8 353 61.5
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 5.3e-127 458.4 347 64.3
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 2.0e-126 456.4 349 61.6
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 7.7e-126 454.5 353 64.0
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.3e-125 453.8 361 59.8
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 3.2e-124 449.1 364 59.1
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.2e-124 449.1 368 59.5
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 5.5e-124 448.4 368 58.2
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 9.4e-124 447.6 356 61.2
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 9.4e-124 447.6 353 61.2
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 3.6e-123 445.7 308 68.5
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 6.1e-123 444.9 356 62.6
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 1.4e-122 443.7 357 58.8
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 5.2e-122 441.8 340 61.5
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 1.1e-121 440.7 351 60.4
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.5e-121 440.3 345 62.6
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 2.0e-121 439.9 341 61.0
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 4.4e-121 438.7 340 60.3
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 7.5e-121 438.0 352 58.0
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 9.7e-121 437.6 349 59.9
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 1.3e-120 437.2 357 58.8
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 3.7e-120 435.6 352 59.7
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 8.2e-120 434.5 344 59.6
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 8.2e-120 434.5 333 61.0
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 1.4e-119 433.7 334 59.6
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 1.8e-119 433.3 336 60.7
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 4.1e-119 432.2 343 60.1
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 5.3e-119 431.8 353 59.8
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 7.0e-119 431.4 338 61.8
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 1.2e-118 430.6 380 55.8
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 2.0e-118 429.9 352 59.7
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.7e-117 426.8 330 61.5
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 2.2e-117 426.4 353 58.1
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 2.9e-117 426.0 378 56.9
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 2.9e-117 426.0 358 56.7
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 5.0e-117 425.2 364 59.3
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 6.5e-117 424.9 300 65.0
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 6.5e-117 424.9 344 57.6
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.1e-116 424.1 358 56.7
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.5e-116 423.7 317 61.8
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 1.5e-116 423.7 296 65.9
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 4.2e-116 422.2 339 57.8
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 5.5e-116 421.8 339 57.8
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 7.2e-116 421.4 335 57.6
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 7.2e-116 421.4 367 58.0
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.2e-115 420.6 383 53.5
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 1.2e-115 420.6 354 56.2
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.6e-115 420.2 318 59.7
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 2.7e-115 419.5 339 58.4
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 8.8e-114 414.5 335 61.5
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 3.4e-113 412.5 296 65.5
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 5.7e-113 411.8 348 57.2
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 9.8e-113 411.0 323 58.5
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 4.8e-112 408.7 346 57.5
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 4.8e-112 408.7 343 58.0
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 3.1e-111 406.0 361 54.6
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 9.1e-111 404.4 354 55.1
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.6e-110 403.7 354 55.1
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 4.5e-110 402.1 342 59.1
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 1.3e-109 400.6 364 56.9
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 5.0e-109 398.7 345 53.6
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.2e-108 396.0 365 52.9
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.6e-107 393.7 306 59.5
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 3.6e-107 392.5 350 55.1
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 6.1e-107 391.7 352 54.0
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 1.4e-106 390.6 343 57.4
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.3e-106 389.8 356 53.1
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 3.0e-106 389.4 343 56.9
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 6.8e-106 388.3 356 55.3
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 1.5e-105 387.1 367 55.0
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 2.0e-105 386.7 343 56.6
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 9.8e-105 384.4 359 55.7
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 1.7e-104 383.6 343 56.6
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 2.8e-104 382.9 343 52.8
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 2.8e-104 382.9 352 53.7
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 4.9e-104 382.1 342 53.2
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 6.3e-104 381.7 352 53.4
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 6.3e-104 381.7 323 57.6
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 8.3e-104 381.3 369 49.9
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 1.1e-103 380.9 349 53.3
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 7.0e-103 378.3 365 52.9
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.2e-102 377.5 360 49.2
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 2.0e-102 376.7 363 49.3
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 3.5e-102 375.9 329 57.8
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 5.9e-102 375.2 361 51.2
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 7.7e-102 374.8 360 54.7
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 5.0e-101 372.1 259 67.2
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 5.0e-101 372.1 351 49.9
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 5.0e-101 372.1 343 53.9
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 8.6e-101 371.3 353 55.5
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 8.6e-101 371.3 254 67.7
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 9.5e-100 367.9 400 47.8
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.7e-99 365.5 363 50.4
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 6.1e-99 365.2 359 52.9
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 1.4e-98 364.0 387 47.8
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.8e-98 363.6 353 54.4
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 1.2e-97 360.9 342 54.4
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 2.0e-97 360.1 307 55.4
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 2.6e-97 359.8 286 56.3
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 3.4e-97 359.4 370 51.4
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 5.7e-97 358.6 359 52.1
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 3.7e-96 355.9 347 52.2
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 4.9e-96 355.5 342 53.5
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.4e-95 353.2 328 54.6
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 2.4e-95 353.2 347 51.9
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 9.2e-95 351.3 362 50.0
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 1.2e-94 350.9 311 53.4
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 3.5e-94 349.4 361 50.1
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 5.9e-94 348.6 362 49.7
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.7e-93 347.1 362 49.4
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 1.2e-91 340.9 346 50.9
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 1.2e-91 340.9 346 50.9
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 8.0e-91 338.2 333 51.4
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 1.8e-90 337.0 341 50.1
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 2.3e-90 336.7 277 56.7
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 4.4e-89 332.4 352 48.9
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 5.8e-89 332.0 349 49.0
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 5.8e-89 332.0 341 49.3
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 1.1e-87 327.8 362 49.2
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.0e-86 323.6 267 59.9
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 6.0e-86 322.0 282 55.7
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 5.8e-81 305.4 311 45.7
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.9e-80 302.4 339 46.6
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 1.3e-77 294.3 314 45.5
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 6.6e-77 292.0 321 45.2
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 1.1e-71 274.6 347 40.1
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 5.4e-71 272.3 324 43.2
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.0e-69 268.1 267 52.4
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.9e-68 263.8 316 41.5
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 9.6e-68 261.5 290 45.2
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 8.1e-67 258.5 316 40.8
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.0e-66 256.1 316 40.8
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 5.8e-65 252.3 340 39.4
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.3e-61 241.1 318 37.4
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.5e-60 237.7 211 54.0
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 6.2e-59 232.3 332 34.3
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.0e-57 227.3 206 51.9
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 1.7e-56 224.2 324 38.0
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 2.2e-56 223.8 292 38.4
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 2.4e-55 220.3 297 36.7
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 5.4e-55 219.2 303 36.3
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 5.4e-55 219.2 303 36.3
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 5.8e-49 199.1 211 45.5
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 5.6e-44 182.6 139 64.0
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.0e-40 171.8 152 50.0
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.3e-37 161.4 118 66.1
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 1.8e-37 161.0 145 53.1
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 2.3e-37 160.6 132 55.3
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.8e-35 153.7 258 35.3
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.1e-34 151.8 141 55.3
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.1e-31 141.7 166 42.2
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 2.1e-30 137.5 113 56.6
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 6.9e-26 122.5 94 62.8
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 9.1e-26 122.1 79 67.1
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 1.5e-20 104.8 189 28.0
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 4.8e-19 99.8 80 62.5
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 5.0e-16 89.7 63 65.1
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.1e-15 88.6 106 46.2
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 5.5e-15 86.3 60 65.0


User provided reference genes

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