Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 4.9e-171 604.4 303 100.0
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 2.0e-108 396.4 303 69.0
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 7.7e-108 394.4 330 63.6
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 5.0e-107 391.7 333 64.0
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 3.2e-106 389.0 303 66.3
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 1.6e-105 386.7 329 62.9
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.7e-105 386.0 314 65.3
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.7e-105 386.0 307 66.4
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 3.6e-105 385.6 215 90.2
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 6.1e-105 384.8 306 65.7
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 2.3e-104 382.9 236 82.6
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 4.0e-104 382.1 311 66.9
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 4.0e-104 382.1 230 84.8
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 4.0e-104 382.1 218 88.1
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.5e-103 380.2 310 65.2
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 9.8e-103 377.5 216 88.9
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 3.7e-102 375.6 217 87.1
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 8.3e-102 374.4 216 88.4
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 8.3e-102 374.4 216 86.6
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 2.4e-101 372.9 230 83.0
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 3.1e-101 372.5 257 76.3
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 5.4e-101 371.7 219 84.9
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 7.0e-101 371.3 236 79.2
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 9.1e-101 370.9 321 64.5
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 3.8e-99 365.5 219 83.1
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 5.0e-99 365.2 224 82.1
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 1.1e-98 364.0 219 82.6
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 2.5e-98 362.8 235 77.9
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 3.2e-98 362.5 224 83.0
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 7.2e-98 361.3 219 83.6
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 2.1e-97 359.8 216 83.3
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 3.0e-96 355.9 219 78.5
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 5.2e-96 355.1 220 80.0
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 8.8e-96 354.4 217 82.0
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 5.7e-95 351.7 215 81.4
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 5.7e-95 351.7 259 72.2
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 7.5e-95 351.3 219 80.8
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 9.8e-95 350.9 219 79.0
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.7e-94 350.1 218 81.2
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.7e-94 350.1 216 84.3
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 3.7e-94 349.0 216 81.0
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 8.3e-94 347.8 251 73.3
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 3.1e-93 345.9 229 76.4
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 4.1e-93 345.5 252 69.8
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 5.4e-93 345.1 219 78.1
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 9.2e-93 344.4 283 64.3
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.2e-92 344.0 217 78.8
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 1.6e-92 343.6 215 78.6
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.6e-92 343.6 205 82.9
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.6e-92 343.6 218 78.9
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 1.6e-92 343.6 215 80.0
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.6e-92 343.6 214 79.4
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 2.0e-92 343.2 219 77.6
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 2.0e-92 343.2 232 77.2
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 2.0e-92 343.2 246 69.9
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 2.7e-92 342.8 283 64.0
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 5.9e-92 341.7 216 78.2
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 1.3e-91 340.5 237 71.3
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 1.3e-91 340.5 226 77.9
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 2.3e-91 339.7 220 77.3
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 2.9e-91 339.3 237 71.3
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 1.9e-90 336.7 238 73.5
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.5e-90 336.3 220 76.8
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 2.5e-90 336.3 256 67.6
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 5.6e-90 335.1 229 76.0
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 5.6e-90 335.1 220 76.8
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 9.5e-90 334.3 220 76.4
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.6e-89 333.6 213 77.0
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 2.1e-89 333.2 257 66.9
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 6.1e-89 331.6 220 75.9
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 1.0e-88 330.9 208 81.7
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 1.8e-88 330.1 220 75.5
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 2.3e-88 329.7 250 71.2
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 2.3e-88 329.7 250 71.2
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 3.0e-88 329.3 220 75.5
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 4.0e-88 328.9 220 75.0
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 6.8e-88 328.2 213 77.5
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 8.9e-88 327.8 219 73.5
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 8.9e-88 327.8 219 76.7
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 8.9e-88 327.8 231 74.9
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 8.9e-88 327.8 205 79.5
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 8.9e-88 327.8 220 74.5
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 8.9e-88 327.8 222 73.4
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 8.9e-88 327.8 231 74.9
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 1.5e-87 327.0 238 69.7
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 2.6e-87 326.2 217 77.4
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 2.6e-87 326.2 208 77.4
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 9.8e-87 324.3 224 75.4
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 9.8e-87 324.3 255 68.6
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 9.8e-87 324.3 220 76.4
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.3e-86 323.9 257 68.1
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.4e-85 320.5 187 82.9
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 1.4e-85 320.5 217 75.6
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.8e-85 320.1 211 73.0
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 4.1e-85 318.9 234 73.1
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 2.7e-84 316.2 232 71.1
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 7.8e-84 314.7 239 69.0
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.0e-83 314.3 214 74.3
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 3.9e-83 312.4 205 76.6
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 5.0e-83 312.0 207 72.5
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 6.6e-83 311.6 213 73.7
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 8.6e-83 311.2 228 73.7
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 5.6e-82 308.5 178 84.8
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 1.4e-80 303.9 211 73.0
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 4.1e-77 292.4 214 72.9
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 5.4e-77 292.0 220 65.9
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 1.3e-75 287.3 211 65.4
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 5.6e-74 282.0 203 69.0
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 5.8e-71 271.9 207 69.6
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 3.7e-70 269.2 295 51.9
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.6e-60 237.3 179 62.0
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 9.0e-56 221.5 175 59.4
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 6.0e-52 208.8 135 75.6
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 2.6e-47 193.4 114 83.3
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.3e-46 191.0 153 64.1
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 7.9e-44 181.8 216 44.9
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 2.8e-41 173.3 207 47.3
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 8.2e-25 118.6 171 37.4
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 8.5e-22 108.6 78 67.9
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 9.4e-21 105.1 75 74.7
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.1e-16 91.7 56 76.8
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 7.9e-12 75.5 163 33.1
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 3.7e-09 66.6 88 43.2
Haze_04051 Corylus avellana HOM05D002543 ORTHO05D002990 1.8e-08 64.3 64 53.1
Cfa006711 Carpinus fangiana HOM05D002543 ORTHO05D002990 3.1e-08 63.5 64 53.1
QL03p017109 Quercus lobata HOM05D002543 ORTHO05D002990 5.3e-08 62.8 64 53.1
QL03p017392 Quercus lobata HOM05D002543 ORTHO05D002990 5.3e-08 62.8 64 53.1
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 7.0e-08 62.4 200 26.5
CiPaw.07G031800 Carya illinoinensis HOM05D002543 ORTHO05D002990 7.0e-08 62.4 64 51.6
Dinv30917 Davidia involucrata HOM05D002543 ORTHO05D002990 7.0e-08 62.4 64 53.1
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 7.0e-08 62.4 264 25.0
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 1.2e-07 61.6 199 24.1
CSS0021124 Camellia sinensis var. sinensis HOM05D002543 ORTHO05D002990 2.0e-07 60.8 64 51.6
Hma1.2p1_0008F-1.1_g005360 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 2.0e-07 60.8 64 51.6
Hma1.2p1_1808F.1_g303465 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 2.0e-07 60.8 64 51.6
Potri.013G006100 Populus trichocarpa HOM05D002543 ORTHO05D002990 2.0e-07 60.8 64 50.0
Sabra13G0005200 Salix brachista HOM05D002543 ORTHO05D002990 2.6e-07 60.5 64 50.0
Atru.chr2.231 Acer truncatum HOM05D002543 ORTHO05D002990 3.4e-07 60.1 64 50.0
Manes.09G179000 Manihot esculenta HOM05D002543 ORTHO05D002990 4.5e-07 59.7 64 48.4
TAR362G1343 Trochodendron aralioides HOM05D002543 ORTHO05D002990 4.5e-07 59.7 64 51.6
CANSAT54G0111 Cannabis sativa HOM05D002543 ORTHO05D002990 5.9e-07 59.3 64 48.4
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 1.7e-06 57.8 207 24.6
Oeu053729.3 Olea europaea HOM05D002543 ORTHO05D002990 1.7e-06 57.8 64 50.0
Cpa.g.sc48.194 Carica papaya HOM05D002543 ORTHO05D002990 2.2e-06 57.4 64 51.6
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 3.8e-06 56.6 200 26.0
GSVIVG01031272001 Vitis vinifera HOM05D002543 ORTHO05D002990 5.0e-06 56.2 64 48.4
ClCG01G010830 Citrullus lanatus HOM05D002543 ORTHO05D002990 6.5e-06 55.8 53 54.7
Lalb_Chr04g0260351 Lupinus albus HOM05D002543 ORTHO05D002990 8.5e-06 55.5 64 46.9


User provided reference genes

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