Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 5.9e-176 620.9 350 100.0
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.4e-156 556.6 309 88.3
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 4.8e-154 548.1 309 86.7
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 2.4e-153 545.8 309 88.0
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 2.6e-152 542.3 309 87.1
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 2.6e-152 542.3 309 86.1
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 5.9e-152 541.2 309 86.7
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 5.9e-152 541.2 309 86.1
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.7e-151 539.7 303 86.8
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 8.5e-151 537.3 310 86.1
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 1.1e-150 537.0 309 85.4
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 1.9e-150 536.2 309 86.1
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 3.2e-150 535.4 311 85.9
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 4.2e-150 535.0 303 85.5
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.2e-149 533.5 303 86.8
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.6e-149 533.1 303 85.1
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 4.7e-149 531.6 303 85.1
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 4.7e-149 531.6 303 86.8
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 6.1e-149 531.2 309 85.4
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 1.8e-148 529.6 303 86.1
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 2.3e-148 529.3 305 86.2
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 4.0e-148 528.5 304 85.9
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 6.7e-148 527.7 303 86.8
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 6.7e-148 527.7 303 85.1
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 6.7e-148 527.7 306 85.6
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 8.8e-148 527.3 309 84.1
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 1.5e-147 526.6 304 85.2
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 2.0e-147 526.2 307 85.0
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 7.5e-147 524.2 304 85.9
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 7.5e-147 524.2 311 83.6
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 2.2e-146 522.7 304 85.2
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 2.8e-146 522.3 309 83.2
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.4e-145 520.0 312 82.7
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.4e-145 520.0 314 82.5
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 2.4e-145 519.2 309 83.5
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 4.1e-145 518.5 312 82.7
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 4.1e-145 518.5 309 82.2
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 5.3e-145 518.1 306 85.6
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 5.3e-145 518.1 304 85.2
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 9.1e-145 517.3 304 84.2
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 9.1e-145 517.3 303 83.8
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.0e-144 516.2 312 82.4
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 2.7e-144 515.8 348 76.7
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.0e-143 513.8 314 82.8
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 1.7e-143 513.1 318 80.5
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.7e-143 513.1 309 83.8
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 6.5e-143 511.1 311 81.4
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 6.5e-143 511.1 303 82.5
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 6.5e-143 511.1 328 79.3
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.5e-142 510.0 309 81.6
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 1.5e-142 510.0 310 81.6
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 9.4e-142 507.3 311 82.0
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 3.6e-141 505.4 310 80.3
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 4.7e-141 505.0 309 81.2
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.3e-140 502.7 297 85.2
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 3.0e-140 502.3 315 80.0
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 5.2e-140 501.5 310 79.7
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 6.8e-140 501.1 309 79.6
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 6.8e-140 501.1 309 80.6
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.2e-139 500.4 299 83.3
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 4.4e-139 498.4 310 79.4
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 2.8e-138 495.7 304 80.3
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.1e-137 493.8 309 79.3
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 1.1e-137 493.8 309 79.3
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.1e-137 493.8 309 79.3
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.1e-137 493.8 309 79.3
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 1.1e-137 493.8 309 79.3
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 1.8e-137 493.0 309 79.6
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 9.1e-137 490.7 309 79.3
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 2.0e-136 489.6 311 79.1
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 4.5e-136 488.4 304 80.3
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 4.5e-136 488.4 304 80.3
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 4.5e-136 488.4 304 80.3
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 7.7e-136 487.6 311 78.8
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 1.3e-135 486.9 305 79.3
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 2.9e-135 485.7 309 79.0
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 2.9e-135 485.7 304 78.0
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 6.5e-135 484.6 311 79.1
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 1.2e-133 480.3 296 80.1
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 1.2e-133 480.3 317 74.8
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 2.1e-133 479.6 305 78.4
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.8e-133 479.2 301 77.4
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.6e-133 478.8 307 79.8
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 8.0e-133 477.6 306 78.8
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 1.0e-132 477.2 308 77.6
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 2.3e-132 476.1 303 78.2
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 4.0e-132 475.3 311 75.9
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 8.9e-132 474.2 316 75.0
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.2e-131 473.8 311 75.6
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 2.0e-131 473.0 307 78.5
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 2.0e-131 473.0 309 76.4
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 2.6e-131 472.6 308 76.6
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 3.4e-131 472.2 309 76.7
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 5.7e-131 471.5 303 77.2
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 7.5e-131 471.1 303 77.2
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 9.8e-131 470.7 308 76.3
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 9.8e-131 470.7 303 76.9
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.3e-130 470.3 316 74.4
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 2.8e-130 469.2 314 75.5
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.1e-129 467.2 316 74.1
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 5.4e-129 464.9 306 76.8
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 7.0e-129 464.5 306 75.8
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 7.0e-129 464.5 309 73.8
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 3.5e-128 462.2 301 77.4
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 2.8e-125 452.6 252 87.7
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 1.1e-121 440.7 253 84.6
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.3e-119 433.7 301 72.4
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.4e-113 413.7 302 71.5
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.7e-112 409.5 295 71.9
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 1.3e-111 407.1 231 85.3
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.4e-108 397.1 231 84.8
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 4.4e-107 392.1 251 78.5
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 7.1e-105 384.8 290 64.5
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 9.2e-105 384.4 306 66.7
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 4.6e-104 382.1 291 69.4
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 6.6e-103 378.3 271 74.5
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 6.6e-103 378.3 279 66.7
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 1.1e-102 377.5 284 63.4
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.5e-102 377.1 302 60.3
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 3.6e-101 372.5 219 84.0
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 1.3e-98 364.0 222 81.1
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 2.9e-98 362.8 302 58.3
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 4.6e-96 355.5 302 58.6
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 2.5e-86 323.2 246 63.4
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.6e-85 319.3 242 69.8
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 1.4e-73 280.8 268 48.5
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 7.1e-73 278.5 149 89.3
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 1.0e-71 274.6 304 51.6
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 2.3e-71 273.5 280 48.6
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.1e-69 266.9 165 81.2
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.0e-50 204.9 225 45.3
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.5e-49 200.3 150 67.3
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.4e-46 189.5 112 83.9
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.7e-42 177.6 291 38.1
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 3.6e-40 169.9 360 33.6
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.8e-39 167.5 194 50.0
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.1e-36 158.3 94 80.9
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.1e-36 156.8 94 79.8
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.1e-36 156.8 94 79.8
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.3e-34 151.4 112 70.5
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 1.9e-33 147.5 114 71.1
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 5.5e-33 146.0 95 80.0
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 8.0e-32 142.1 128 60.9
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 4.5e-19 99.8 64 78.1
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 5.9e-19 99.4 51 94.1
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 4.2e-17 93.2 53 81.1
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.6e-16 91.3 67 70.1
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.6e-16 91.3 99 52.5
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.5e-14 84.7 93 51.6
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.2e-13 80.9 48 79.2
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.2e-13 80.9 48 79.2
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.6e-08 64.7 83 44.6


User provided reference genes

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