Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 0.0e+00 1102.8 556 100.0
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 3.2e-245 851.7 566 76.9
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.2e-235 817.8 553 72.9
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.1e-232 808.1 572 71.5
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.7e-230 802.7 492 79.5
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 8.6e-230 800.4 484 80.0
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.5e-229 799.7 489 79.8
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.5e-229 798.9 564 71.5
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 7.3e-229 797.3 562 71.0
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.8e-228 795.4 561 72.7
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.0e-227 793.5 532 74.2
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 3.0e-227 792.0 562 71.7
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 5.2e-227 791.2 558 71.3
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.0e-226 789.3 563 70.2
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.7e-225 785.0 498 77.5
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.4e-224 783.1 498 77.9
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.2e-224 781.9 556 71.0
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 9.2e-224 780.4 560 70.7
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 4.6e-223 778.1 521 73.1
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.7e-222 776.2 537 72.1
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.7e-222 776.2 556 70.5
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 3.9e-222 775.0 528 73.1
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.1e-221 773.5 562 70.8
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.5e-221 772.3 494 75.9
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 4.3e-221 771.5 585 68.5
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 5.6e-221 771.2 563 70.2
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 9.5e-221 770.4 554 70.9
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.1e-220 769.2 554 70.9
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 8.0e-220 767.3 557 70.6
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 2.3e-219 765.8 472 78.6
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.3e-219 765.8 512 72.9
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 4.0e-219 765.0 557 70.2
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 4.0e-219 765.0 574 69.0
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 4.0e-219 765.0 547 70.9
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.5e-218 763.1 529 70.7
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 3.4e-218 761.9 478 78.2
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.2e-217 759.2 516 73.4
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.2e-217 759.2 539 69.9
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-216 756.5 561 70.6
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.9e-216 756.1 539 70.5
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.4e-216 755.7 561 70.4
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.4e-216 755.7 561 70.4
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 6.0e-215 751.1 556 68.9
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.0e-214 750.4 544 69.9
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.3e-214 749.2 503 72.6
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 3.9e-214 748.4 557 68.6
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 3.9e-214 748.4 478 76.4
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 5.0e-214 748.0 520 70.8
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 6.6e-214 747.7 556 69.1
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.5e-213 746.5 474 76.4
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.5e-213 746.5 474 76.4
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.3e-213 745.0 497 72.8
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 7.3e-213 744.2 539 69.4
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 9.5e-213 743.8 544 69.7
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.2e-212 743.4 474 75.3
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 6.2e-212 741.1 474 75.9
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.1e-211 740.3 542 69.0
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.8e-211 739.6 474 75.7
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 5.2e-211 738.0 548 68.8
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 6.8e-211 737.6 474 75.9
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 6.8e-211 737.6 522 70.9
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 6.8e-211 737.6 469 74.6
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.6e-210 735.7 512 71.5
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 9.8e-210 733.8 466 76.0
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 6.4e-209 731.1 546 67.4
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 6.4e-209 731.1 574 67.1
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.4e-208 729.9 555 65.2
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.9e-208 729.6 552 67.8
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.1e-208 728.4 486 73.9
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 7.1e-208 727.6 559 66.4
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 9.2e-208 727.2 548 66.8
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.2e-207 726.9 484 73.8
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.6e-207 726.5 540 69.3
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.6e-207 726.5 563 67.0
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.9e-206 721.8 547 69.1
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 5.1e-206 721.5 593 63.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.9e-205 719.5 613 62.3
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 7.3e-205 717.6 533 67.4
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 7.3e-205 717.6 517 67.5
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 9.5e-205 717.2 551 66.8
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.2e-204 716.8 538 66.9
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 6.2e-204 714.5 539 67.9
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 6.2e-204 714.5 546 67.4
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 8.1e-204 714.1 465 74.8
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 8.1e-204 714.1 459 76.7
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.1e-203 713.8 541 66.9
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.1e-203 712.2 549 67.9
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 4.0e-203 711.8 521 68.5
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 6.8e-203 711.1 556 66.7
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 8.9e-203 710.7 545 67.5
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.0e-202 709.5 471 75.6
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 4.4e-202 708.4 545 67.3
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 7.6e-202 707.6 570 62.6
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.3e-201 706.8 510 67.5
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-200 703.7 549 67.2
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.4e-200 702.6 566 65.4
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.4e-200 701.4 500 70.2
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.1e-199 699.5 471 72.4
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 2.7e-199 699.1 696 55.5
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.9e-198 695.3 471 70.3
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.5e-197 693.3 476 72.3
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.1e-195 687.2 462 71.0
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.4e-195 686.8 561 64.7
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.8e-195 686.4 458 71.8
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.1e-195 685.6 539 64.9
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.5e-194 683.3 548 64.8
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.6e-194 682.6 514 66.1
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.4e-194 681.8 549 65.8
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.2e-193 679.5 538 63.9
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 8.4e-193 677.6 524 65.6
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.1e-189 667.2 518 65.4
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.9e-181 639.8 567 61.4
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.5e-178 630.2 597 57.8
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.4e-178 629.0 464 64.9
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 9.0e-171 604.4 363 80.2
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.7e-169 600.1 366 80.1
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.1e-168 597.4 553 59.9
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 7.9e-167 591.3 506 60.5
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 5.5e-160 568.5 391 69.8
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.9e-159 564.7 568 55.6
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.8e-155 553.5 462 59.3
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.3e-153 547.4 498 60.0
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.8e-150 537.0 469 57.6
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 8.2e-148 528.1 470 55.5
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 9.1e-147 524.6 362 70.4
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.3e-140 504.2 401 66.3
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.2e-140 503.4 361 71.2
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.8e-139 500.4 326 74.8
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 4.2e-136 489.2 381 65.4
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 2.0e-125 453.8 370 66.2
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.0e-125 453.8 289 75.1
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 6.6e-113 412.1 303 67.7
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.8e-110 404.1 482 46.7
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.8e-110 404.1 243 78.2
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 4.9e-108 396.0 475 45.9
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.3e-102 377.1 319 64.6
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 7.5e-101 372.1 225 78.2
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 4.9e-100 369.4 219 79.9
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 4.7e-95 352.8 212 79.7
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 6.4e-92 342.4 232 72.8
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 6.4e-92 342.4 313 59.1
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.1e-91 341.7 295 58.6
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 5.4e-91 339.3 256 64.1
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.2e-90 338.2 453 41.7
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 2.0e-85 320.9 215 71.6
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.6e-79 300.1 187 80.2
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.4e-78 298.1 266 62.4
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 3.1e-78 297.0 472 37.5
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 6.4e-76 289.3 266 54.1
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.1e-63 247.7 275 51.3
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.8e-62 244.6 483 34.4
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.7e-60 238.0 184 68.5
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.5e-56 224.2 179 62.0
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.1e-54 218.8 285 46.0
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.3e-48 197.2 147 67.3
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.7e-47 193.7 114 79.8
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.6e-45 187.6 125 68.0
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.0e-44 185.7 124 69.4
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 7.4e-40 169.5 137 59.1
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 6.5e-36 156.4 324 36.7
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.2e-34 152.1 153 55.6
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 4.7e-34 150.2 320 35.6
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 7.9e-34 149.4 114 62.3
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.5e-32 145.2 193 48.2
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 3.7e-31 140.6 88 73.9
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 8.2e-31 139.4 81 76.5
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.4e-30 138.7 80 83.8
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.6e-29 134.4 76 81.6
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.3e-28 132.1 77 81.8
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.7e-26 124.4 133 55.6
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 8.8e-25 119.4 64 87.5
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 8.2e-23 112.8 117 53.0
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.4e-22 112.1 84 60.7
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.4e-22 111.3 63 82.5
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.3e-20 105.5 104 49.0
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 3.2e-19 100.9 64 71.9
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 5.5e-19 100.1 83 61.4
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 4.7e-18 97.1 64 65.6
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.0e-17 95.9 80 61.2
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 8.8e-17 92.8 55 74.5
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 4.1e-14 84.0 51 68.6
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 9.1e-14 82.8 162 36.4
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 4.5e-13 80.5 48 83.3
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.5e-11 75.5 121 43.0
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 2.2e-07 61.6 43 62.8
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.7e-07 60.8 156 30.8
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.4e-06 58.9 67 41.8


User provided reference genes

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