Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0522 Cannabis sativa HOM05D004351 ORTHO05D005196 1.1e-80 303.1 148 100.0
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 3.6e-66 255.0 131 94.7
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 6.5e-60 234.2 127 86.6
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 2.5e-59 232.3 138 78.3
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 3.2e-59 231.9 131 81.7
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 4.2e-59 231.5 138 77.5
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 7.2e-59 230.7 138 77.5
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 9.4e-59 230.3 132 81.1
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 1.6e-58 229.6 131 81.7
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.6e-58 229.6 138 76.8
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 1.6e-58 229.6 138 76.8
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.6e-58 229.6 132 79.5
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 2.1e-58 229.2 138 76.8
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 2.7e-58 228.8 138 77.5
Cpa.g.sc34.179 Carica papaya HOM05D004351 ORTHO05D005196 3.6e-58 228.4 131 81.7
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 3.6e-58 228.4 138 76.1
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 3.6e-58 228.4 138 76.8
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 4.7e-58 228.0 131 80.9
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 4.7e-58 228.0 138 76.8
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 6.1e-58 227.6 131 81.7
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 1.0e-57 226.9 131 80.2
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 1.4e-57 226.5 138 76.1
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 1.8e-57 226.1 131 77.9
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 1.8e-57 226.1 131 79.4
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.8e-57 226.1 138 76.8
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 1.8e-57 226.1 138 76.8
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 1.8e-57 226.1 132 79.5
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 3.0e-57 225.3 127 81.1
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 3.0e-57 225.3 138 74.6
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 4.0e-57 224.9 138 76.1
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 4.0e-57 224.9 131 79.4
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 4.0e-57 224.9 131 79.4
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 4.0e-57 224.9 131 79.4
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 5.2e-57 224.6 127 82.7
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 6.7e-57 224.2 131 77.9
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 6.7e-57 224.2 131 78.6
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 6.7e-57 224.2 138 74.6
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 8.8e-57 223.8 138 77.5
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 8.8e-57 223.8 131 80.2
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 1.2e-56 223.4 131 79.4
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 1.2e-56 223.4 138 75.4
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 1.2e-56 223.4 131 79.4
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 1.5e-56 223.0 127 81.9
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 1.5e-56 223.0 131 77.1
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 2.0e-56 222.6 139 75.5
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 2.0e-56 222.6 138 76.8
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 2.6e-56 222.2 127 81.1
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 3.3e-56 221.9 138 74.6
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 4.4e-56 221.5 139 75.5
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 5.7e-56 221.1 131 77.1
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 5.7e-56 221.1 138 74.6
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 5.7e-56 221.1 139 74.8
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 5.7e-56 221.1 131 78.6
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 5.7e-56 221.1 131 77.9
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 7.5e-56 220.7 131 77.9
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 7.5e-56 220.7 131 77.1
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 7.5e-56 220.7 131 77.1
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 7.5e-56 220.7 138 75.4
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 7.5e-56 220.7 127 82.7
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 7.5e-56 220.7 131 77.9
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 9.7e-56 220.3 131 76.3
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 1.3e-55 219.9 131 77.9
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 1.3e-55 219.9 131 77.9
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 1.7e-55 219.5 131 76.3
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.7e-55 219.5 131 77.1
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 2.2e-55 219.2 138 73.9
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 2.2e-55 219.2 144 70.8
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 2.2e-55 219.2 131 77.9
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 2.2e-55 219.2 131 77.9
Rhsim13G0210400 Rhododendron simsii HOM05D004351 ORTHO05D005196 2.2e-55 219.2 131 77.9
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 2.8e-55 218.8 138 73.2
PSO211G0001 Papaver somniferum HOM05D004351 ORTHO05D005196 2.8e-55 218.8 138 71.7
PSO384G0035 Papaver somniferum HOM05D004351 ORTHO05D005196 2.8e-55 218.8 138 71.7
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 4.8e-55 218.0 131 76.3
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 6.3e-55 217.6 141 71.6
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 6.3e-55 217.6 131 77.1
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 6.3e-55 217.6 138 74.6
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 6.3e-55 217.6 131 77.1
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 8.2e-55 217.2 131 76.3
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 1.1e-54 216.9 141 73.0
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 1.8e-54 216.1 138 71.7
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 2.4e-54 215.7 131 75.6
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 2.4e-54 215.7 128 82.0
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 2.4e-54 215.7 159 66.7
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 2.4e-54 215.7 139 71.9
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 3.1e-54 215.3 131 74.0
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 3.1e-54 215.3 131 74.0
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 4.1e-54 214.9 131 74.8
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 4.1e-54 214.9 139 71.9
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 5.3e-54 214.5 131 74.8
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 7.0e-54 214.2 139 71.2
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 7.0e-54 214.2 127 77.2
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 9.1e-54 213.8 138 71.7
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 9.1e-54 213.8 131 75.6
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 1.6e-53 213.0 127 77.2
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 2.7e-53 212.2 138 71.7
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 2.7e-53 212.2 141 69.5
Cc00_g05730 Coffea canephora HOM05D004351 ORTHO05D005196 1.0e-52 210.3 138 71.0
vmacro04977 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 1.3e-52 209.9 138 70.3
Cc00_g05710 Coffea canephora HOM05D004351 ORTHO05D005196 2.2e-52 209.1 138 71.0
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 2.2e-52 209.1 127 76.4
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 3.2e-51 205.3 131 69.5
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 7.2e-51 204.1 131 70.2
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 1.2e-50 203.4 138 67.4
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 2.7e-50 202.2 131 71.0
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 1.8e-49 199.5 131 71.0
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 1.2e-48 196.8 129 69.8
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 3.1e-46 188.7 127 66.9
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 3.1e-46 188.7 131 67.2
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 7.0e-46 187.6 127 65.4
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 1.3e-44 183.3 106 79.2
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 2.9e-44 182.2 131 61.8
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 3.3e-43 178.7 131 67.2
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 4.2e-43 178.3 127 64.6
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 2.3e-41 172.6 131 62.6
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 8.9e-41 170.6 125 63.2
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 2.6e-40 169.1 126 60.3
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 3.7e-39 165.2 131 60.3
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 1.1e-38 163.7 100 75.0
CSS0045717 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 3.8e-36 155.2 139 60.4
CBR_g36942 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-34 150.2 106 68.9
MELO3C031085.2 Cucumis melo HOM05D004351 ORTHO05D005196 3.7e-31 138.7 158 48.1
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 6.4e-31 137.9 84 82.1
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 7.0e-30 134.4 121 52.1
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 3.5e-29 132.1 121 51.2
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 3.1e-25 119.0 98 66.3
MCO02G098 Micromonas commoda HOM05D004351 ORTHO05D005196 6.8e-25 117.9 122 42.6
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 4.6e-21 105.1 98 59.2
Haze_26934 Corylus avellana HOM05D004351 ORTHO05D005196 1.1e-19 100.5 119 42.0
Haze_26731 Corylus avellana HOM05D004351 ORTHO05D005196 2.5e-19 99.4 111 38.7
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 1.2e-13 80.5 43 81.4
arahy.Tifrunner.gnm1.ann1.FI1QHS Arachis hypogaea HOM05D004351 ORTHO05D005196 3.5e-13 79.0 77 57.1
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 6.0e-13 78.2 52 65.4
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 3.8e-07 58.9 28 92.9
VMungo0540G1052 Vigna mungo HOM05D004351 ORTHO05D005196 6.4e-07 58.2 41 65.9


User provided reference genes

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