Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 7.0e-104 380.6 184 100.0
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 6.4e-73 277.7 180 73.3
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 8.3e-73 277.3 184 72.8
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 3.2e-72 275.4 184 72.3
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 3.5e-71 271.9 184 72.3
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 4.6e-71 271.6 176 71.0
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 4.6e-71 271.6 178 70.8
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 6.0e-71 271.2 185 69.2
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.0e-70 270.4 183 71.0
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 2.3e-70 269.2 179 71.5
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 1.9e-69 266.2 184 68.5
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 3.3e-69 265.4 181 69.6
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 4.3e-69 265.0 181 69.6
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 7.3e-69 264.2 183 68.3
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 2.1e-68 262.7 183 66.1
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.6e-68 261.9 181 69.1
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 6.2e-68 261.2 186 67.7
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.1e-67 260.4 185 65.9
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 2.4e-67 259.2 183 65.6
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 2.4e-67 259.2 182 68.1
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 3.1e-67 258.8 185 67.6
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 6.8e-67 257.7 172 70.3
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.2e-66 256.9 180 67.2
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.5e-66 256.5 178 68.5
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 1.5e-66 256.5 184 64.7
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 2.6e-66 255.8 186 65.1
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 3.4e-66 255.4 178 68.0
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 3.4e-66 255.4 178 68.0
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 3.4e-66 255.4 181 66.9
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 3.4e-66 255.4 185 64.9
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 4.4e-66 255.0 174 67.8
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 5.8e-66 254.6 176 65.9
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 7.6e-66 254.2 177 67.8
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 9.9e-66 253.8 188 64.9
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 9.9e-66 253.8 185 63.8
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 9.9e-66 253.8 179 67.0
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 9.9e-66 253.8 183 63.9
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 9.9e-66 253.8 183 64.5
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.3e-65 253.4 178 66.9
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.3e-65 253.4 184 65.8
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.3e-65 253.4 181 66.9
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 2.2e-65 252.7 177 67.8
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 2.2e-65 252.7 178 66.3
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.1e-64 250.4 184 63.6
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 2.4e-64 249.2 178 63.5
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 2.4e-64 249.2 178 64.0
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 4.2e-64 248.4 180 65.6
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 4.2e-64 248.4 181 62.4
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 7.1e-64 247.7 184 63.6
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 7.1e-64 247.7 178 66.3
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 7.1e-64 247.7 178 64.0
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 9.3e-64 247.3 174 66.7
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 9.3e-64 247.3 176 67.6
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 1.2e-63 246.9 185 63.8
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.6e-63 246.5 177 62.7
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.6e-63 246.5 174 66.7
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 2.7e-63 245.7 173 68.2
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 3.5e-63 245.4 176 67.6
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 3.5e-63 245.4 176 63.6
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 4.6e-63 245.0 178 65.2
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 4.6e-63 245.0 178 64.6
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 6.0e-63 244.6 179 64.8
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 7.8e-63 244.2 180 62.8
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 7.8e-63 244.2 178 64.0
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.0e-62 243.8 180 63.9
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 1.3e-62 243.4 177 66.1
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 1.7e-62 243.0 174 64.4
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.3e-62 242.7 177 62.7
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 3.9e-62 241.9 180 64.4
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.9e-62 241.9 175 65.7
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 8.7e-62 240.7 174 64.4
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 8.7e-62 240.7 166 67.5
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 1.5e-61 240.0 176 66.5
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.3e-61 238.8 175 62.3
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 3.3e-61 238.8 176 62.5
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 6.2e-60 234.6 166 65.7
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 6.2e-60 234.6 171 66.7
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 1.4e-59 233.4 171 66.1
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 2.4e-59 232.6 183 60.7
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 3.1e-59 232.3 183 60.7
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 4.0e-59 231.9 175 62.9
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 5.3e-59 231.5 180 62.8
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 9.0e-59 230.7 178 60.7
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 3.4e-58 228.8 181 61.3
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 7.6e-58 227.6 176 59.1
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 7.6e-58 227.6 180 55.6
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 7.6e-58 227.6 180 55.6
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.8e-57 225.3 148 70.3
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.4e-56 223.4 176 56.8
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 3.2e-56 222.2 173 58.4
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 5.4e-56 221.5 175 60.0
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 7.1e-56 221.1 155 67.7
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 3.5e-55 218.8 180 57.8
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 3.5e-55 218.8 177 59.9
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 4.6e-55 218.4 157 65.6
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.3e-54 216.9 155 65.8
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 8.7e-54 214.2 166 62.0
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 5.6e-53 211.5 178 59.0
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 1.6e-52 209.9 172 58.7
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 6.9e-51 204.5 181 53.0
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.2e-50 203.8 153 62.7
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.7e-49 199.9 150 63.3
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 3.5e-47 192.2 173 55.5
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 2.3e-46 189.5 155 56.1
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 2.6e-42 176.0 176 46.6
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 2.5e-40 169.5 178 44.9
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 9.3e-40 167.5 130 59.2
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 1.6e-39 166.8 137 59.1
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.3e-38 162.9 175 44.0
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 6.7e-38 161.4 178 43.3
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.1e-37 160.6 129 57.4
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 5.8e-34 148.3 179 42.5
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.7e-26 121.3 128 49.2
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 1.5e-21 107.1 71 73.2
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 1.5e-21 107.1 174 35.6
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 2.4e-19 99.8 183 36.1
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 8.5e-17 91.3 153 37.9
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 4.8e-12 75.5 59 55.9
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 2.4e-11 73.2 97 42.3
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 4.2e-08 62.4 180 28.9
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 9.4e-08 61.2 201 27.9
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 2.7e-07 59.7 184 27.7
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 3.6e-07 59.3 184 27.7
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 3.6e-07 59.3 181 27.6
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 4.7e-07 58.9 185 28.6
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 8.0e-07 58.2 184 28.8
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 1.0e-06 57.8 185 29.2
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 1.0e-06 57.8 185 29.2
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 1.0e-06 57.8 187 27.8
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.4e-06 57.4 184 27.2
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 1.4e-06 57.4 184 27.2
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 1.4e-06 57.4 184 27.2


User provided reference genes

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