Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 4.9e-260 900.6 450 100.0
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 6.5e-196 687.6 443 79.0
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.5e-195 686.4 443 79.0
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.2e-195 684.9 443 78.8
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.4e-193 679.9 444 77.9
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.8e-193 679.5 437 77.8
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.0e-193 678.7 443 78.1
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 3.7e-191 671.8 443 79.0
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 6.1e-186 654.4 440 77.0
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 8.0e-186 654.1 440 76.6
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.2e-184 650.2 435 74.0
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 6.4e-183 644.4 449 72.6
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.9e-182 642.9 433 74.6
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.6e-181 639.8 433 74.4
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 3.5e-181 638.6 438 72.8
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 6.0e-181 637.9 435 74.5
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 7.8e-181 637.5 435 73.6
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.3e-180 636.0 435 72.9
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 8.6e-180 634.0 449 71.7
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.5e-179 633.3 461 70.7
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.9e-179 632.9 435 73.3
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.3e-179 632.1 439 72.9
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 6.2e-178 627.9 435 72.6
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 6.2e-178 627.9 438 73.1
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 3.1e-177 625.5 434 71.7
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 6.8e-177 624.4 436 71.3
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 8.9e-177 624.0 437 71.6
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.5e-176 623.2 436 71.3
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.5e-176 623.2 435 71.0
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 2.0e-176 622.9 435 71.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 7.5e-176 620.9 436 70.6
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 2.2e-175 619.4 437 70.9
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 7.0e-174 614.4 432 70.6
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.6e-173 613.2 411 74.2
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.7e-173 612.5 439 70.8
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 6.0e-173 611.3 465 67.1
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 6.0e-173 611.3 467 67.0
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.3e-172 610.1 439 72.2
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.7e-172 609.8 438 70.8
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 6.6e-172 607.8 442 69.9
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 6.6e-172 607.8 442 69.9
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 8.6e-172 607.4 434 70.7
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.5e-171 605.9 442 69.7
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 3.3e-171 605.5 436 68.1
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 7.3e-171 604.4 454 67.8
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.8e-170 602.4 435 69.0
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 8.1e-170 600.9 439 71.3
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 8.9e-169 597.4 437 67.5
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 4.4e-168 595.1 455 66.8
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 7.5e-168 594.3 435 69.0
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 7.5e-168 594.3 435 69.0
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.4e-166 590.1 434 67.3
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.6e-165 586.6 435 67.6
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.7e-165 585.9 434 66.8
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 7.8e-165 584.3 402 71.4
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 7.8e-165 584.3 449 67.0
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 3.0e-164 582.4 441 68.0
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 8.6e-164 580.9 442 67.4
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 2.5e-163 579.3 430 69.5
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 7.3e-163 577.8 434 65.9
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 9.5e-163 577.4 436 66.5
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.2e-162 577.0 437 67.3
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.0e-161 572.0 437 66.8
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 5.8e-160 568.2 391 73.4
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 3.2e-158 562.4 433 65.8
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.1e-157 559.7 439 64.7
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 6.0e-157 558.1 391 73.1
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.8e-154 549.3 406 70.0
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 4.7e-154 548.5 439 62.9
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 5.3e-153 545.0 439 64.5
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 9.9e-152 540.8 441 61.7
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.3e-151 540.4 444 63.7
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.3e-151 540.4 445 63.4
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 3.8e-151 538.9 458 60.0
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 6.4e-151 538.1 438 62.3
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 8.4e-151 537.7 420 65.2
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.4e-150 536.2 459 63.2
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 7.1e-150 534.6 452 60.8
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.6e-149 533.5 440 63.2
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.7e-149 532.7 454 60.4
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 6.0e-149 531.6 458 60.0
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 7.8e-149 531.2 459 59.9
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.0e-148 530.8 433 63.0
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.7e-148 530.0 446 61.4
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 3.0e-148 529.3 438 64.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 3.9e-148 528.9 460 60.7
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 4.3e-147 525.4 460 60.0
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.4e-145 520.4 384 68.2
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 9.0e-145 517.7 384 68.0
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.8e-144 515.0 388 66.0
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 5.8e-144 515.0 437 63.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.9e-143 512.7 438 62.8
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.4e-142 509.6 437 62.2
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 4.2e-142 508.8 395 66.3
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.6e-141 506.9 395 66.1
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.7e-141 506.1 383 67.4
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.0e-140 504.2 384 69.3
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 6.7e-140 501.5 396 63.9
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.6e-139 497.7 435 59.3
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.8e-138 496.1 350 71.4
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 8.1e-138 494.6 409 65.0
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.0e-137 492.3 423 59.3
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 5.3e-137 491.9 438 58.4
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.5e-136 488.8 438 61.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.4e-134 483.8 443 60.3
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 9.3e-134 481.1 308 75.6
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 9.3e-134 481.1 339 71.7
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 3.5e-133 479.2 436 57.3
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.3e-132 477.2 429 58.5
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.9e-129 464.9 476 54.8
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.6e-128 463.0 300 75.7
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.9e-126 456.8 420 57.9
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.2e-126 456.1 435 55.2
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.1e-124 448.7 435 54.9
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 6.3e-122 441.8 438 53.9
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.8e-121 440.3 388 59.0
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.3e-116 423.3 444 53.6
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 4.3e-115 419.1 438 53.7
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.3e-114 417.5 353 61.2
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 3.7e-98 362.8 323 59.4
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 2.0e-96 357.1 443 49.4
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.0e-95 354.8 280 63.6
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.2e-90 337.0 282 60.6
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 3.7e-90 336.3 284 61.6
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.0e-89 332.0 288 60.4
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 9.1e-89 331.6 288 59.0
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 2.5e-86 323.6 352 50.3
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.7e-82 309.7 282 57.8
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.4e-81 307.8 289 53.6
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 2.9e-79 300.1 231 62.3
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.2e-77 294.7 159 95.6
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.3e-74 284.6 331 44.7
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 5.4e-73 279.3 157 91.1
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.0e-73 278.9 156 91.0
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.0e-73 278.9 156 91.0
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 1.7e-71 274.2 164 76.8
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 8.6e-71 271.9 155 89.7
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 7.3e-70 268.9 369 42.8
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.1e-69 267.3 193 65.8
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 6.8e-68 262.3 156 85.9
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.1e-65 255.0 145 87.6
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 9.2e-65 251.9 281 50.5
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 5.8e-59 232.6 511 35.8
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 5.8e-59 232.6 141 82.3
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.1e-57 228.4 133 88.7
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.9e-57 227.6 184 65.2
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 3.6e-53 213.4 182 61.0
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.8e-52 211.1 122 85.2
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 5.8e-51 206.1 484 33.1
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 1.3e-50 204.9 132 84.1
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.2e-50 204.1 233 48.1
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 4.6e-48 196.4 154 59.1
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 5.8e-43 179.5 178 58.4
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 2.9e-42 177.2 99 92.9
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 2.9e-42 177.2 106 84.9
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.9e-41 174.5 309 38.2
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.2e-35 155.2 140 57.9
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 3.5e-32 143.7 121 61.2
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 1.6e-29 134.8 146 52.1
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 9.3e-25 119.0 210 37.1
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 2.1e-24 117.9 68 89.7
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.3e-20 103.2 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.8e-18 97.1 56 91.1
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-16 92.0 101 48.5
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 3.5e-16 90.5 257 30.0
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.4e-12 78.6 57 68.4
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 2.1e-08 64.7 74 48.6
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 7.4e-06 56.2 49 53.1


User provided reference genes

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