Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 0.0e+00 2391.3 1202 100.0
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 0.0e+00 1292.3 1248 57.9
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 0.0e+00 1247.3 1243 56.4
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 0.0e+00 1232.2 1251 55.1
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 0.0e+00 1223.8 1244 54.4
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 0.0e+00 1164.8 1237 52.6
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 0.0e+00 1157.9 1232 52.6
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 0.0e+00 1139.8 1230 53.2
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 0.0e+00 1139.8 1242 51.8
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 0.0e+00 1134.8 1248 52.0
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 0.0e+00 1108.6 1275 51.2
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 0.0e+00 1104.0 1252 50.8
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 0.0e+00 1094.7 948 60.0
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 0.0e+00 1084.3 1115 53.7
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 9.9e-311 1070.5 1243 50.6
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 3.9e-304 1048.5 1251 49.2
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 1.6e-302 1043.1 1234 49.7
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 4.2e-298 1028.5 1171 49.7
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 7.9e-297 1024.2 827 62.0
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 1.1e-295 1020.4 937 58.1
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 5.0e-291 1005.0 1292 47.1
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 7.1e-290 1001.1 1251 48.0
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 1.8e-288 996.5 1313 45.7
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 6.9e-285 984.6 1238 47.7
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 1.2e-281 973.8 1208 47.6
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 6.1e-281 971.5 1259 45.1
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 3.9e-280 968.8 1271 46.4
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 8.5e-275 951.0 1236 45.1
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 2.5e-274 949.5 1234 47.2
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 2.4e-269 932.9 853 57.0
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 3.1e-269 932.6 1253 46.4
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 5.9e-268 928.3 1206 45.0
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 4.2e-266 922.2 1120 48.8
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 6.7e-264 914.8 1144 47.4
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 1.1e-263 914.1 1053 51.4
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 1.4e-261 907.1 1264 43.0
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 3.1e-261 906.0 822 56.0
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 2.4e-253 879.8 1204 44.1
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 3.1e-253 879.4 1206 43.9
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 3.1e-253 879.4 1251 43.6
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 5.4e-253 878.6 1211 43.7
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 1.2e-247 860.9 1017 49.0
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 9.8e-247 857.8 918 50.9
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 2.3e-243 846.7 979 50.8
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 3.8e-243 845.9 728 60.6
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 8.6e-243 844.7 853 52.5
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 4.2e-242 842.4 833 54.0
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 2.8e-241 839.7 1017 48.4
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 3.0e-240 836.3 826 54.2
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 1.3e-238 830.9 923 50.4
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 2.9e-238 829.7 826 54.0
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 3.2e-237 826.2 1113 43.8
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 2.0e-236 823.5 923 49.5
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 1.5e-231 807.4 1209 41.3
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 1.7e-230 803.9 1203 41.6
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 1.2e-225 787.7 973 45.5
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 7.5e-223 778.5 1102 42.6
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 1.9e-221 773.9 1211 39.6
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 5.4e-221 772.3 1228 40.6
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 4.3e-210 736.1 1189 40.1
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 5.8e-207 725.7 837 50.5
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 6.6e-195 685.6 1171 38.0
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 1.4e-192 677.9 639 54.6
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 3.4e-183 646.7 931 42.5
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.9e-178 630.9 880 40.2
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 8.2e-177 625.5 820 45.6
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 4.5e-175 619.8 885 41.6
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 9.3e-173 612.1 845 40.8
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 7.9e-172 609.0 1211 36.0
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 2.0e-162 577.8 884 41.1
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 4.4e-154 550.1 780 40.8
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 1.5e-149 535.0 671 44.4
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 4.2e-149 533.5 486 56.8
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 9.7e-146 522.3 812 40.6
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 1.1e-144 518.8 480 58.3
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 3.4e-138 497.3 514 51.8
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 8.7e-86 323.2 627 38.4
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 1.3e-78 299.3 757 28.5
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 6.9e-75 287.0 353 44.8
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 8.1e-68 263.5 885 27.7
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 2.9e-65 255.0 189 65.6
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 6.0e-63 247.3 603 32.2
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 4.3e-53 214.5 574 29.8
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 8.2e-52 210.3 225 51.1
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 3.1e-51 208.4 218 50.9
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 3.4e-50 204.9 218 50.5
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 1.3e-41 176.4 591 26.6
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.5e-29 136.3 111 63.1
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 3.7e-28 131.7 91 69.2
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 2.0e-26 125.9 120 55.8
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 7.7e-26 124.0 674 23.1
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 2.3e-22 112.5 98 64.3
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.5e-21 109.8 94 63.8
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 4.4e-21 108.2 390 29.2
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 8.3e-20 104.0 93 61.3
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 2.4e-19 102.4 89 57.3
MCO09G563 Micromonas commoda HOM05D009332 ORTHO05D011893 5.4e-19 101.3 667 22.0
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.3e-17 96.7 77 57.1
MCO12G477 Micromonas commoda HOM05D009332 ORTHO05D011893 4.2e-16 91.7 567 22.6
Hma1.2p1_0763F.1_g214650 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 5.5e-16 91.3 191 38.2
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 9.5e-16 90.5 220 35.0
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 6.8e-14 84.3 338 29.6
Cre12.g489750 Chlamydomonas reinhardtii HOM05D015011 ORTHO05D017325 7.0e-11 74.3 648 20.1
PRCOL_00001262 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 7.0e-11 74.3 530 21.9
MCO11G281 Micromonas commoda HOM05D015011 ORTHO05D017325 4.5e-10 71.6 736 19.2
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 5.9e-10 71.2 162 33.3
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 5.9e-10 71.2 121 37.2
PRCOL_00001248 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 2.3e-09 69.3 146 31.5
AagrBONN_evm.TU.Sc2ySwM_117.1583 Anthoceros agrestis HOM05D000526 ORTHO05D000956 6.6e-09 67.8 312 21.2
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 3.3e-08 65.5 73 47.9
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 3.3e-08 65.5 95 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2040 Anthoceros agrestis HOM05D015011 ORTHO05D017325 5.6e-08 64.7 280 23.2
Phvul.008G196400 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 6.1e-07 61.2 136 28.7
Sed0021710 Sechium edule HOM05D007125 ORTHO05D008766 8.0e-07 60.8 73 45.2
Pp3c21_3130 Physcomitrium patens HOM05D000526 ORTHO05D000956 1.8e-06 59.7 289 21.1
Pp3c21_3140 Physcomitrium patens HOM05D000526 ORTHO05D000956 1.8e-06 59.7 289 21.1
SMO367G0740 Selaginella moellendorffii HOM05D000526 ORTHO05D000956 3.0e-06 58.9 311 20.6


User provided reference genes

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