Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1902.9 957 100.0
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1476.5 905 81.3
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1463.0 907 80.3
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1454.1 908 79.6
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1450.6 898 80.3
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1442.6 904 79.6
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1431.0 953 76.6
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1423.7 904 78.7
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1421.4 956 76.2
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1417.1 963 75.7
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1416.4 926 76.9
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1414.1 906 77.9
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1411.0 910 77.4
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1410.6 989 73.8
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1407.9 905 78.0
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1406.7 963 75.2
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1405.6 924 76.4
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1404.0 905 77.7
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1399.0 966 75.1
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1397.9 907 77.4
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1392.1 887 79.3
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1390.2 907 77.3
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1389.0 905 77.1
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1384.0 951 74.3
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1382.5 947 73.7
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1380.2 914 75.5
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1378.2 908 76.0
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1375.9 911 75.7
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1375.5 913 75.8
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1375.1 914 75.8
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1374.8 905 76.7
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1374.4 901 75.6
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1372.8 908 75.8
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1363.2 966 72.8
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1362.4 968 71.8
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1362.4 884 76.6
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1359.4 883 76.0
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1359.4 960 72.0
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1357.4 904 75.4
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1356.3 911 75.1
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1354.0 960 72.7
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1350.5 926 74.0
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1347.4 879 76.3
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1345.5 881 76.8
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1345.1 922 75.1
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1344.7 910 73.8
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1343.6 946 71.9
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1342.0 966 71.4
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1338.9 938 73.6
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1335.9 910 74.3
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1335.1 905 74.6
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1334.3 908 73.6
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1332.8 905 73.8
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1322.8 906 73.4
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1317.8 902 74.9
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1317.4 1015 67.9
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1311.6 928 72.3
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1306.6 962 70.2
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1305.4 813 80.6
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1304.7 909 72.3
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1303.5 914 73.3
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1293.9 936 70.6
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1276.5 942 70.4
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1275.8 906 71.9
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1267.3 888 72.2
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1265.4 840 75.1
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1262.3 811 77.6
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1248.0 954 69.5
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1234.6 908 69.9
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1227.6 900 69.1
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1221.8 926 68.7
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1219.5 905 68.6
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1213.7 954 65.1
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1213.0 899 67.7
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1212.6 889 68.8
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1212.2 899 68.1
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1208.4 875 69.3
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1207.6 937 68.1
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1204.1 884 67.6
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1198.0 910 66.9
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1188.3 942 66.9
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1187.6 910 66.7
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1182.9 876 67.7
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1173.3 895 66.1
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1172.1 885 66.3
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1169.5 964 63.5
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1165.6 888 65.4
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1164.8 878 67.4
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1156.7 886 65.6
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1154.8 936 66.7
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1154.0 890 66.0
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1144.0 901 65.0
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1106.7 808 68.8
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1096.3 905 63.1
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 1.6e-284 983.0 825 63.2
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 1.8e-280 969.5 878 56.0
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 1.5e-277 959.9 709 67.8
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 9.1e-272 940.6 935 51.2
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 2.3e-259 899.4 600 75.2
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.4e-258 895.2 593 76.7
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 7.8e-255 884.4 684 67.5
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 6.2e-252 874.8 593 75.9
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 1.0e-251 874.0 591 75.3
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 9.6e-213 744.6 928 47.1
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 5.8e-210 735.3 510 72.9
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 1.1e-205 721.1 561 65.2
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 8.1e-204 714.9 912 47.3
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 8.4e-201 704.9 445 76.9
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 5.9e-194 682.2 631 56.7
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 1.5e-189 667.5 534 63.5
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 5.3e-187 659.1 726 48.3
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 1.4e-184 651.0 417 76.0
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 4.7e-175 619.4 398 77.6
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 1.8e-134 484.6 333 74.2
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 5.1e-121 439.9 266 79.7
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 3.6e-103 380.6 280 68.9
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 9.0e-102 375.9 274 69.7
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 5.8e-93 346.7 338 57.4
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.6e-90 338.6 216 80.1
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.6e-79 302.0 238 63.4
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 5.5e-67 260.4 172 73.3
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 6.9e-62 243.4 250 52.4
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.1e-54 219.5 216 50.5
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.5e-43 181.8 225 49.8
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.5e-37 161.0 98 81.6
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.3e-36 158.7 164 56.7
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 1.4e-25 122.9 82 73.2
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 1.3e-23 116.3 411 24.3
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 1.1e-22 113.2 139 52.5
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-21 109.8 268 31.3
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 8.6e-20 103.6 58 89.7
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 8.3e-15 87.0 69 65.2
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 2.6e-08 65.5 82 45.1
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 3.4e-08 65.1 145 35.2
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.9e-07 61.2 37 81.1
CBR_g45572 Chara braunii HOM05D000785 ORTHO05D000231 3.2e-06 58.5 52 57.7


User provided reference genes

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