Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 1.4e-66 256.1 128 100.0
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 3.0e-37 158.7 121 60.3
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 3.9e-37 158.3 121 57.9
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 1.1e-36 156.8 121 60.3
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 2.0e-36 156.0 121 58.7
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.0e-36 156.0 121 58.7
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 3.3e-36 155.2 119 59.7
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 9.7e-36 153.7 121 58.7
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 1.3e-35 153.3 121 58.7
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.3e-35 153.3 116 59.5
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 1.7e-35 152.9 121 58.7
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 2.2e-35 152.5 121 60.3
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.2e-35 152.5 116 59.5
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 2.2e-35 152.5 116 59.5
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 2.8e-35 152.1 119 58.0
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.7e-35 151.8 116 58.6
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 3.7e-35 151.8 121 56.2
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 4.8e-35 151.4 121 57.9
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 4.8e-35 151.4 121 57.9
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 4.8e-35 151.4 121 57.9
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 4.8e-35 151.4 121 57.9
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 4.8e-35 151.4 121 57.9
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 4.8e-35 151.4 121 57.9
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 4.8e-35 151.4 121 57.0
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 4.8e-35 151.4 116 58.6
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 4.8e-35 151.4 116 58.6
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 4.8e-35 151.4 121 57.0
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 6.3e-35 151.0 119 58.0
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 1.8e-34 149.4 121 56.2
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 1.8e-34 149.4 121 57.0
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 2.4e-34 149.1 121 56.2
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 2.4e-34 149.1 116 56.9
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 4.1e-34 148.3 121 57.0
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 4.1e-34 148.3 116 56.9
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 5.3e-34 147.9 116 56.0
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 6.9e-34 147.5 121 57.0
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 6.9e-34 147.5 115 58.3
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 6.9e-34 147.5 121 57.0
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 6.9e-34 147.5 121 57.0
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 6.9e-34 147.5 121 54.5
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 6.9e-34 147.5 121 56.2
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 9.1e-34 147.1 121 55.4
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 9.1e-34 147.1 121 55.4
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 1.2e-33 146.7 116 56.0
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 1.5e-33 146.4 116 55.2
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 1.5e-33 146.4 116 55.2
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 2.0e-33 146.0 116 55.2
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 2.0e-33 146.0 121 57.0
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 2.0e-33 146.0 121 57.9
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 2.0e-33 146.0 123 58.5
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 2.6e-33 145.6 119 54.6
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 2.6e-33 145.6 121 57.0
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 2.6e-33 145.6 121 55.4
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 3.4e-33 145.2 118 55.9
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 3.4e-33 145.2 118 55.9
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 3.4e-33 145.2 107 61.7
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 3.4e-33 145.2 121 54.5
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 3.4e-33 145.2 121 56.2
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 3.4e-33 145.2 121 55.4
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 3.4e-33 145.2 123 57.7
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 3.4e-33 145.2 115 59.1
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 3.4e-33 145.2 121 56.2
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 4.5e-33 144.8 118 58.5
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 4.5e-33 144.8 120 55.0
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 5.9e-33 144.4 121 54.5
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 7.7e-33 144.1 119 52.9
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 7.7e-33 144.1 121 55.4
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 7.7e-33 144.1 116 55.2
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 7.7e-33 144.1 121 56.2
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 7.7e-33 144.1 121 55.4
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.3e-32 143.3 116 57.8
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 1.7e-32 142.9 115 54.8
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 1.7e-32 142.9 121 55.4
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 2.2e-32 142.5 121 52.9
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.2e-32 142.5 105 61.9
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.9e-32 142.1 121 55.4
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.9e-32 142.1 121 55.4
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 3.8e-32 141.7 115 56.5
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 5.0e-32 141.4 115 56.5
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 5.0e-32 141.4 121 54.5
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 5.0e-32 141.4 119 53.8
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 6.5e-32 141.0 121 54.5
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 1.1e-31 140.2 121 52.9
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 1.1e-31 140.2 120 53.3
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.1e-31 140.2 121 56.2
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 1.1e-31 140.2 118 57.6
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 1.1e-31 140.2 119 53.8
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 1.4e-31 139.8 119 53.8
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 1.9e-31 139.4 116 55.2
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 3.2e-31 138.7 119 52.1
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 4.2e-31 138.3 116 53.4
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 4.2e-31 138.3 116 53.4
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 4.2e-31 138.3 115 55.7
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 5.5e-31 137.9 116 53.4
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 5.5e-31 137.9 121 55.4
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 5.5e-31 137.9 121 55.4
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 5.5e-31 137.9 120 55.0
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 7.2e-31 137.5 118 54.2
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 7.2e-31 137.5 118 53.4
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 9.4e-31 137.1 117 53.8
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 1.2e-30 136.7 116 54.3
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.2e-30 136.7 116 52.6
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 1.2e-30 136.7 118 55.9
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.2e-30 136.7 118 52.5
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 2.1e-30 136.0 121 52.9
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.1e-30 136.0 121 52.1
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 3.6e-30 135.2 118 53.4
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 7.9e-30 134.0 115 53.9
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 1.0e-29 133.7 151 45.0
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.0e-29 133.7 115 53.9
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 1.4e-29 133.3 115 54.8
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 1.4e-29 133.3 116 51.7
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 1.8e-29 132.9 121 51.2
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 2.3e-29 132.5 116 54.3
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 2.3e-29 132.5 121 48.8
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 2.3e-29 132.5 116 56.0
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 2.0e-28 129.4 126 49.2
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 7.4e-28 127.5 121 49.6
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 6.3e-27 124.4 119 52.1
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.1e-26 123.6 121 52.1
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 2.4e-26 122.5 118 51.7
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.3e-26 121.3 115 48.7
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 7.0e-26 120.9 100 54.0
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 7.7e-25 117.5 121 50.4
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 6.5e-24 114.4 103 50.5
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 2.5e-23 112.5 98 53.1
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 1.8e-21 106.3 116 48.3
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 3.0e-21 105.5 107 45.8
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 8.8e-21 104.0 118 40.7
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.3e-19 100.1 84 57.1
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.1e-18 97.1 118 43.2
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 2.2e-16 89.4 101 45.5
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.1e-15 87.0 79 51.9
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.1e-15 87.0 53 69.8
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 7.2e-15 84.3 78 50.0
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 1.2e-14 83.6 91 41.8
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 2.7e-14 82.4 119 37.0
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 4.7e-14 81.6 58 63.8
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 1.0e-13 80.5 116 37.9
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 1.4e-13 80.1 71 54.9
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.3e-13 79.3 96 44.8
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 1.2e-12 77.0 71 49.3
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.1e-10 68.9 82 41.5
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 2.7e-09 65.9 75 44.0
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 4.5e-09 65.1 117 33.3
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 1.5e-07 60.1 69 40.6
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 1.2e-06 57.0 105 33.3
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 1.6e-06 56.6 45 48.9


User provided reference genes

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