Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.0e-210 736.5 370 100.0
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.5e-148 529.3 358 73.5
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.0e-147 524.6 361 73.7
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.0e-146 523.9 356 74.2
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 8.7e-146 520.8 338 76.0
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 9.6e-145 517.3 343 75.5
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 6.2e-144 514.6 346 73.7
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-143 513.8 369 71.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 4.0e-143 511.9 322 79.2
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.0e-142 509.6 336 76.2
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 5.8e-142 508.1 322 78.0
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.7e-141 506.5 334 76.0
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.9e-141 505.8 336 75.3
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.0e-141 505.0 322 77.6
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 6.5e-141 504.6 334 74.6
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 8.4e-141 504.2 330 76.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.1e-140 503.8 326 76.4
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.9e-140 503.1 322 77.3
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.5e-140 502.7 336 73.8
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.5e-140 502.7 336 77.1
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 3.2e-140 502.3 340 74.1
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 5.5e-140 501.5 336 73.8
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 7.1e-140 501.1 328 73.8
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 7.1e-140 501.1 393 66.9
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.2e-139 500.4 324 75.0
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.2e-139 500.4 334 74.9
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-139 500.4 333 73.9
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.5e-139 498.8 324 74.7
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.3e-138 496.9 341 73.0
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.3e-138 496.9 329 74.8
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.3e-138 496.9 323 74.9
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.3e-138 496.9 324 74.1
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.9e-138 495.4 329 76.0
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.1e-138 495.0 324 75.0
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 6.7e-138 494.6 330 74.5
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 6.7e-138 494.6 326 75.2
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.5e-137 493.4 343 70.8
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.9e-137 493.0 324 75.0
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 3.3e-137 492.3 330 74.2
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.3e-137 492.3 334 74.0
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 4.3e-137 491.9 338 72.8
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 4.3e-137 491.9 342 72.2
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 5.7e-137 491.5 323 74.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 7.4e-137 491.1 328 73.2
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 9.7e-137 490.7 352 70.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.3e-136 490.3 337 72.4
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.3e-136 490.3 335 72.5
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.3e-136 490.3 335 72.5
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.6e-136 490.0 378 69.0
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 2.2e-136 489.6 338 71.6
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.2e-136 489.6 335 72.2
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.2e-136 489.6 324 74.1
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 4.8e-136 488.4 345 71.0
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 4.8e-136 488.4 339 71.7
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 8.2e-136 487.6 333 73.0
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 8.2e-136 487.6 345 71.0
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 8.2e-136 487.6 324 75.6
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.1e-135 487.3 338 72.5
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.4e-135 486.9 327 73.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.8e-135 486.5 317 77.3
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.8e-135 486.5 366 68.0
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.8e-135 486.5 330 72.4
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.1e-135 485.7 343 71.1
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.1e-135 485.7 339 72.0
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 4.1e-135 485.3 339 71.4
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 5.3e-135 485.0 339 71.4
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 6.9e-135 484.6 336 72.9
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.0e-134 483.0 342 71.6
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.6e-134 482.6 331 71.9
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 7.7e-134 481.1 337 71.8
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.3e-133 480.3 338 71.3
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 8.5e-133 477.6 331 72.2
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.9e-132 476.5 336 72.3
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.2e-132 475.7 323 72.8
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 4.2e-132 475.3 345 69.9
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 4.2e-132 475.3 340 70.9
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 5.5e-132 474.9 353 68.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 5.5e-132 474.9 341 70.7
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 9.4e-132 474.2 304 76.6
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.2e-131 473.8 351 69.5
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.7e-131 472.6 323 72.1
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 6.1e-131 471.5 349 69.6
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 6.1e-131 471.5 346 69.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 6.1e-131 471.5 328 70.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.4e-130 470.3 316 73.1
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.4e-130 470.3 334 70.4
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.8e-130 469.9 306 76.1
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.8e-130 469.9 327 71.9
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.8e-130 469.9 349 68.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.8e-130 469.9 327 72.5
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 3.0e-130 469.2 351 67.5
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 3.9e-130 468.8 357 66.9
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 5.1e-130 468.4 336 69.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 6.7e-130 468.0 339 69.0
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.8e-130 467.6 341 68.9
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.5e-129 466.1 339 69.0
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.5e-129 466.1 391 63.4
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.7e-128 463.4 315 74.6
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 2.2e-128 463.0 339 69.3
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 2.8e-128 462.6 337 68.8
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.1e-127 460.7 331 68.9
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.1e-127 460.7 352 65.9
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 6.9e-127 458.0 330 69.4
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 6.9e-127 458.0 323 69.7
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.5e-126 456.8 347 68.3
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.6e-126 456.1 309 74.1
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 7.7e-126 454.5 325 70.5
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.7e-125 453.4 328 68.9
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 2.9e-125 452.6 331 70.1
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 8.5e-125 451.1 339 66.4
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.1e-124 450.7 348 65.8
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.5e-124 448.4 311 72.3
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.6e-123 446.8 325 69.8
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.1e-123 446.4 549 47.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.6e-123 445.7 382 61.5
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.8e-122 443.4 334 66.2
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.1e-121 440.7 322 67.7
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 4.4e-121 438.7 330 67.6
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.7e-121 437.6 324 67.3
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 4.8e-120 435.3 338 64.5
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 9.1e-119 431.0 341 65.1
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.5e-118 429.1 338 63.6
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 5.2e-114 415.2 312 64.7
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.6e-113 412.9 322 65.2
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 4.4e-113 412.1 323 66.3
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.3e-112 410.6 265 75.8
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 6.3e-112 408.3 344 63.7
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 7.0e-111 404.8 259 76.8
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 6.8e-106 388.3 264 74.6
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.0e-105 386.7 267 72.7
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.4e-105 386.0 327 61.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 5.4e-95 352.1 342 53.5
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 8.0e-91 338.2 215 75.8
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 2.3e-90 336.7 287 63.4
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 5.2e-90 335.5 321 54.2
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.5e-89 334.0 227 73.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.9e-88 328.9 200 79.5
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.7e-86 323.2 290 56.9
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 4.6e-86 322.4 210 74.3
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.2e-83 314.3 210 76.2
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 6.8e-82 308.5 351 51.9
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 4.4e-81 305.8 223 70.0
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.9e-68 263.8 163 79.1
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 5.6e-68 262.3 375 42.4
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.8e-66 257.3 178 71.3
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 6.8e-66 255.4 166 73.5
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 4.3e-60 236.1 218 59.2
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.9e-56 223.4 165 70.9
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.1e-55 221.5 161 68.9
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.4e-55 221.1 177 62.7
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 4.6e-46 189.5 329 39.2
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 6.0e-46 189.1 278 42.8
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.3e-45 188.0 124 73.4
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.1e-39 168.3 193 49.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.5e-31 139.4 337 32.0
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.5e-30 136.7 112 63.4
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.4e-28 129.0 109 56.0
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 2.1e-27 127.5 253 34.0
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.7e-24 117.9 63 87.3
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 4.6e-22 109.8 341 30.2
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.7e-20 102.8 120 47.5
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 4.5e-17 93.2 64 70.3
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.0e-16 92.0 91 51.6
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.2e-16 90.9 57 71.9
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.9e-14 82.4 56 69.6
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.0e-13 82.0 63 61.9
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.0e-09 67.8 60 53.3
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 1.0e-08 65.5 121 37.2


User provided reference genes

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