Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 2.0e-163 580.5 809 100.0
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 2.3e-66 258.1 267 52.8
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.3e-65 254.2 242 61.6
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.2e-64 251.5 241 62.2
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 2.4e-63 248.1 152 75.0
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 2.4e-63 248.1 270 58.9
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 5.3e-63 246.9 238 58.4
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 5.3e-63 246.9 238 55.5
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 1.0e-61 242.7 175 68.6
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 1.0e-61 242.7 167 70.7
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.5e-60 236.9 175 68.0
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.4e-58 232.3 168 67.9
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 1.5e-57 228.8 179 64.2
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 2.6e-57 228.0 243 49.4
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 4.4e-57 227.3 168 67.3
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 5.7e-57 226.9 244 50.4
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 9.7e-57 226.1 168 65.5
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 2.2e-56 224.9 175 61.7
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 3.7e-56 224.2 244 54.5
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 4.8e-56 223.8 146 72.6
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 6.3e-56 223.4 220 65.0
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 8.2e-56 223.0 169 63.9
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 1.1e-55 222.6 143 76.2
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.4e-55 222.2 164 65.2
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 1.4e-55 222.2 158 66.5
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.8e-55 221.9 170 63.5
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 1.8e-55 221.9 158 65.8
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 4.1e-55 220.7 214 58.9
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 5.3e-55 220.3 145 72.4
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 5.3e-55 220.3 142 75.4
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 7.0e-55 219.9 235 56.6
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 7.0e-55 219.9 170 62.4
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.5e-54 218.8 175 61.1
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.5e-54 218.8 250 54.8
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.5e-54 218.8 210 56.2
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 2.6e-54 218.0 221 54.3
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 2.6e-54 218.0 240 50.4
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 3.5e-54 217.6 168 62.5
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 4.5e-54 217.2 170 65.3
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 7.7e-54 216.5 143 72.0
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 7.7e-54 216.5 221 62.0
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 1.7e-53 215.3 269 46.5
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 2.9e-53 214.5 154 67.5
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 1.5e-52 212.2 229 59.0
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 1.9e-52 211.8 147 72.1
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 2.5e-52 211.5 151 67.5
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 4.2e-52 210.7 143 72.7
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 5.5e-52 210.3 198 58.1
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 9.4e-52 209.5 258 48.1
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 1.6e-51 208.8 198 56.6
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 1.6e-51 208.8 136 72.8
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 8.0e-51 206.5 161 64.6
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 8.0e-51 206.5 127 75.6
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.4e-50 205.7 238 53.4
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 5.2e-50 203.8 169 59.2
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 6.7e-50 203.4 214 51.9
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 8.8e-50 203.0 139 71.9
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 8.8e-50 203.0 131 74.0
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 1.5e-49 202.2 124 76.6
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 2.0e-49 201.8 155 64.5
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 2.6e-49 201.4 128 75.0
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 2.6e-49 201.4 144 69.4
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 3.3e-49 201.1 136 72.1
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 3.3e-49 201.1 136 72.1
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.3e-49 201.1 239 51.5
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 4.4e-49 200.7 128 75.0
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 5.7e-49 200.3 139 70.5
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 5.7e-49 200.3 136 72.1
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 7.4e-49 199.9 141 69.5
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 7.4e-49 199.9 151 66.9
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.7e-48 198.7 151 64.2
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 1.7e-48 198.7 126 76.2
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 1.7e-48 198.7 126 76.2
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 3.7e-48 197.6 145 66.9
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 4.8e-48 197.2 125 75.2
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 6.3e-48 196.8 140 69.3
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.1e-47 196.1 141 66.7
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 1.1e-47 196.1 149 66.4
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 1.1e-47 196.1 243 56.4
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 1.8e-47 195.3 234 49.1
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 2.4e-47 194.9 128 71.9
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 2.4e-47 194.9 137 70.8
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 3.1e-47 194.5 239 49.4
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.1e-47 194.5 239 49.4
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 5.3e-47 193.7 140 67.9
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 7.0e-47 193.4 126 69.8
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 9.1e-47 193.0 125 72.8
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 2.6e-46 191.4 152 62.5
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 2.6e-46 191.4 141 68.1
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 3.5e-46 191.0 157 58.0
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 5.9e-46 190.3 186 59.7
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 5.9e-46 190.3 186 59.7
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 1.0e-45 189.5 174 56.3
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 2.9e-45 188.0 166 59.0
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 1.5e-44 185.7 207 58.0
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 4.2e-44 184.1 241 44.0
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 2.1e-43 181.8 216 46.8
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 1.0e-42 179.5 136 63.2
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 8.8e-42 176.4 127 63.0
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 9.7e-41 172.9 137 63.5
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 4.1e-39 167.5 163 54.6
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 1.3e-37 162.5 122 63.1
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 8.5e-37 159.8 168 50.0
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 2.5e-36 158.3 119 67.2
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 5.2e-34 150.6 180 47.8
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.2e-33 149.4 128 58.6
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.1e-31 142.9 169 46.7
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 7.7e-30 136.7 114 57.0
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 8.0e-27 126.7 114 54.4
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.3e-26 125.2 111 70.3
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 5.7e-25 120.6 108 53.7
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 9.8e-25 119.8 107 72.0
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 3.7e-24 117.9 107 72.9
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 4.9e-24 117.5 104 53.8
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 4.9e-24 117.5 86 62.8
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 3.5e-22 111.3 107 55.1
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 2.3e-21 108.6 107 53.3
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 2.9e-21 108.2 117 47.0
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.9e-20 105.5 81 63.0
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 3.1e-18 98.2 72 59.7
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 4.0e-18 97.8 113 61.9
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 3.4e-17 94.7 84 58.3
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.9e-15 89.0 88 71.6
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 1.7e-13 82.4 61 63.9
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 2.3e-13 82.0 50 80.0
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 3.0e-13 81.6 62 59.7
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 3.9e-13 81.3 60 56.7
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 3.3e-12 78.2 82 45.1
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 3.1e-10 71.6 57 54.4
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 1.2e-09 69.7 141 24.8
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 1.5e-09 69.3 141 24.8
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 2.6e-09 68.6 141 24.8
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 2.6e-09 68.6 141 24.8
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 7.5e-09 67.0 167 23.4
MELO3C010518.2 Cucumis melo HOM05D000104 ORTHO05D009920 2.2e-08 65.5 153 29.4
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 2.2e-08 65.5 172 25.6
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 2.2e-08 65.5 150 31.3
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 2.9e-08 65.1 172 28.5
Sed0002743 Sechium edule HOM05D000104 ORTHO05D009920 2.9e-08 65.1 162 28.4
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 6.4e-08 63.9 167 27.5
Dinv35763 Davidia involucrata HOM05D006740 ORTHO05D008571 8.3e-08 63.5 142 25.4
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 8.3e-08 63.5 136 28.7
SGA_v2.0_scaffold7G03966 Striga asiatica HOM05D006740 ORTHO05D008571 8.3e-08 63.5 142 25.4
TAR374G0752 Trochodendron aralioides HOM05D000424 ORTHO05D000355 8.3e-08 63.5 145 29.7
COL.COLO4_05681 Corchorus olitorius HOM05D006740 ORTHO05D008571 1.1e-07 63.2 128 27.3
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 1.1e-07 63.2 142 23.9
CsaV3_4G027960 Cucumis sativus L. HOM05D000104 ORTHO05D009920 1.9e-07 62.4 135 29.6
AL4G33600 Arabidopsis lyrata HOM05D006740 ORTHO05D008571 3.2e-07 61.6 142 25.4
Lj2g0000352 Lotus japonicus HOM05D000424 ORTHO05D000355 3.2e-07 61.6 147 26.5
Medtr1g108270 Medicago truncatula HOM05D000424 ORTHO05D000355 3.2e-07 61.6 148 27.0
Potri.010G077400 Populus trichocarpa HOM05D006740 ORTHO05D008571 4.1e-07 61.2 174 25.9
Lj5g0007824 Lotus japonicus HOM05D000424 ORTHO05D000355 5.4e-07 60.8 147 26.5
Phvul.002G180100 Phaseolus vulgaris HOM05D006740 ORTHO05D008571 5.4e-07 60.8 142 25.4
Rhsim11G0102200 Rhododendron simsii HOM05D007830 ORTHO05D009947 5.4e-07 60.8 130 29.2
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 5.4e-07 60.8 135 28.9
Carub.0004s1913 Capsella rubella HOM05D006740 ORTHO05D008571 7.1e-07 60.5 140 25.7
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 9.2e-07 60.1 169 26.0
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 1.6e-06 59.3 145 28.3
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 1.6e-06 59.3 151 25.2
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.6e-06 59.3 135 26.7
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 1.6e-06 59.3 135 26.7
Phvul.007G037500 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 1.6e-06 59.3 150 26.0
SHI09190 Sapria himalayana HOM05D000424 ORTHO05D000355 1.6e-06 59.3 117 32.5
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 1.6e-06 59.3 142 22.5
Hma1.2p1_0951F.1_g240750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.1e-06 58.9 145 26.9
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 3.5e-06 58.2 150 29.3
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 3.5e-06 58.2 150 26.0
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.6e-06 57.8 135 26.7
AT2G37230 Arabidopsis thaliana HOM05D006740 ORTHO05D008571 6.0e-06 57.4 173 23.1
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 6.0e-06 57.4 143 28.7
PGSC0003DMG400025520 Solanum tuberosum HOM05D000424 ORTHO05D000355 6.0e-06 57.4 147 29.3
CDE05G3024 Ceratophyllum demersum HOM05D006740 ORTHO05D008571 7.8e-06 57.0 128 26.6
MBI16_g32951_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 7.8e-06 57.0 143 28.0


User provided reference genes

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