Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 6.2e-73 277.3 136 100.0
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 2.9e-62 241.9 136 86.8
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 4.9e-62 241.1 138 87.7
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 4.9e-62 241.1 138 87.7
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 6.4e-62 240.7 139 87.8
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 6.4e-62 240.7 139 87.8
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 1.4e-61 239.6 134 86.6
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.4e-61 239.6 136 86.8
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 3.2e-61 238.4 136 85.3
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 7.1e-61 237.3 136 85.3
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 2.7e-60 235.3 136 83.1
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 6.0e-60 234.2 136 86.0
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 7.8e-60 233.8 136 83.8
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 1.0e-59 233.4 137 83.9
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.7e-59 232.6 136 86.0
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 3.0e-59 231.9 136 84.6
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 3.9e-59 231.5 136 84.6
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 3.9e-59 231.5 138 83.3
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 3.9e-59 231.5 138 82.6
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 5.1e-59 231.1 137 81.8
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 5.1e-59 231.1 136 83.1
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.1e-58 229.9 136 82.4
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.9e-58 229.2 137 83.2
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 3.3e-58 228.4 135 81.5
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 1.2e-57 226.5 134 79.9
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 1.2e-57 226.5 136 81.6
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.6e-57 226.1 136 81.6
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.1e-57 225.7 136 81.6
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 4.7e-57 224.6 134 80.6
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 4.7e-57 224.6 137 81.8
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 6.2e-57 224.2 136 82.4
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 1.1e-56 223.4 134 81.3
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.4e-56 223.0 138 78.3
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.8e-56 222.6 134 83.6
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 1.8e-56 222.6 137 81.8
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 2.4e-56 222.2 136 80.1
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.4e-56 222.2 136 80.1
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 2.4e-56 222.2 139 77.7
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 5.2e-56 221.1 137 78.1
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 6.9e-56 220.7 136 77.2
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 6.9e-56 220.7 138 79.7
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 6.9e-56 220.7 136 80.9
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 9.0e-56 220.3 137 80.3
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.2e-55 219.9 138 76.8
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 1.5e-55 219.5 137 80.3
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 2.0e-55 219.2 138 79.0
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 2.0e-55 219.2 136 80.1
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.0e-55 219.2 138 79.0
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 2.0e-55 219.2 138 79.0
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 5.8e-55 217.6 147 76.2
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 5.8e-55 217.6 136 74.3
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 5.8e-55 217.6 139 75.5
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 5.8e-55 217.6 136 78.7
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 7.6e-55 217.2 136 80.1
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 9.9e-55 216.9 134 79.9
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 9.9e-55 216.9 134 80.6
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 9.9e-55 216.9 136 80.9
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.3e-54 216.5 136 77.2
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 1.7e-54 216.1 138 77.5
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 1.7e-54 216.1 138 79.0
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 1.7e-54 216.1 132 78.8
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 2.2e-54 215.7 136 77.9
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 2.2e-54 215.7 137 77.4
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 3.8e-54 214.9 136 77.2
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 4.9e-54 214.5 137 78.1
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 4.9e-54 214.5 139 77.7
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 8.4e-54 213.8 136 77.2
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 8.4e-54 213.8 136 76.5
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 8.4e-54 213.8 136 76.5
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 1.1e-53 213.4 137 78.1
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 1.9e-53 212.6 136 75.7
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 2.4e-53 212.2 131 80.2
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 2.4e-53 212.2 136 75.7
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 4.2e-53 211.5 137 78.1
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 5.4e-53 211.1 137 77.4
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 7.1e-53 210.7 136 75.0
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 7.1e-53 210.7 138 76.8
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 3.5e-52 208.4 132 78.0
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 4.6e-52 208.0 130 76.9
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 1.0e-51 206.8 136 75.0
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 1.7e-51 206.1 131 77.1
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 3.0e-51 205.3 137 73.0
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 3.0e-51 205.3 131 76.3
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 8.7e-51 203.8 137 73.0
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.5e-50 203.0 136 72.1
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 2.5e-50 202.2 137 73.0
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 3.3e-50 201.8 143 70.6
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 1.3e-49 199.9 138 73.2
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 1.6e-49 199.5 146 71.2
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 1.6e-49 199.5 146 71.2
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 1.6e-49 199.5 146 71.2
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 1.6e-49 199.5 146 71.2
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 2.8e-49 198.7 139 71.9
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 8.1e-49 197.2 138 71.0
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 5.3e-48 194.5 119 74.8
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 9.9e-47 190.3 113 77.0
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 1.3e-46 189.9 138 69.6
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 3.8e-46 188.3 115 78.3
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 6.4e-46 187.6 113 77.9
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 8.4e-46 187.2 115 76.5
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 8.4e-46 187.2 113 77.9
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 8.4e-46 187.2 119 79.0
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.1e-45 186.8 115 76.5
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 4.2e-45 184.9 115 75.7
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 5.4e-45 184.5 113 76.1
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 3.5e-44 181.8 108 77.8
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 4.6e-44 181.4 109 77.1
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 4.6e-44 181.4 109 77.1
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 4.6e-44 181.4 109 77.1
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 4.6e-44 181.4 120 69.2
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 4.6e-44 181.4 143 65.0
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 7.9e-44 180.6 129 67.4
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 7.9e-44 180.6 129 67.4
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 1.3e-43 179.9 109 76.1
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 1.3e-43 179.9 109 76.1
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 1.8e-43 179.5 118 69.5
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 6.7e-43 177.6 108 77.8
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 3.3e-42 175.3 111 80.2
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 3.1e-40 168.7 134 66.4
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 5.8e-39 164.5 98 72.4
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 4.2e-37 158.3 93 75.3
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 1.1e-34 150.2 137 60.6
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 3.3e-34 148.7 126 56.3
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 4.8e-33 144.8 118 68.6
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 1.2e-31 140.2 84 75.0
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 1.4e-29 133.3 128 56.2
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 1.0e-27 127.1 107 60.7
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 2.3e-27 125.9 110 57.3
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 2.3e-27 125.9 72 86.1
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 2.5e-26 122.5 81 81.5
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 2.8e-25 119.0 126 47.6
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 1.1e-24 117.1 136 52.9
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.4e-24 115.9 59 88.1
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 2.4e-24 115.9 72 72.2
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 3.2e-21 105.5 74 75.7
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 4.2e-21 105.1 70 67.1
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 2.7e-20 102.4 81 65.4
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 7.9e-20 100.9 75 65.3
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 2.3e-19 99.4 126 46.8
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 6.7e-19 97.8 59 71.2
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 4.3e-18 95.1 122 41.8
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 6.9e-16 87.8 56 78.6
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 4.5e-15 85.1 59 66.1
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 6.5e-14 81.3 80 53.8
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 8.5e-14 80.9 107 39.3
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.8e-11 73.2 76 57.9
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 6.7e-11 71.2 143 37.8
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 3.3e-10 68.9 82 46.3
CSS0036753 Camellia sinensis var. sinensis HOM05D008986 ORTHO05D113366 3.8e-06 55.5 62 62.9


User provided reference genes

Program Settings