Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0260 Cannabis sativa HOM05D019351 ORTHO05D018844 1.0e-282 976.1 489 100.0
CANSAT56G4506 Cannabis sativa HOM05D019351 ORTHO05D018844 3.5e-195 685.3 378 93.1
CANSAT01G1553 Cannabis sativa HOM05D019351 ORTHO05D018844 3.5e-110 402.9 320 70.3
CANSAT01G1470 Cannabis sativa HOM05D019351 ORTHO05D018844 1.9e-79 300.8 152 96.1
CANSAT01G2426 Cannabis sativa HOM05D019351 ORTHO05D018844 1.6e-78 297.7 158 94.3
CANSAT01G1126 Cannabis sativa HOM05D019351 ORTHO05D018844 6.7e-45 186.0 111 86.5
Sabra17G0002200 Salix brachista HOM05D000063 ORTHO05D050471 1.1e-26 125.6 254 32.3
Potri.017G018801 Populus trichocarpa HOM05D000455 ORTHO05D050471 3.5e-25 120.6 258 31.8
Ciclev10020105m.g Citrus clementina HOM05D002639 ORTHO05D010823 8.5e-24 115.9 304 28.6
Potri.017G019466 Populus trichocarpa HOM05D000030 ORTHO05D000009 2.8e-22 110.9 257 30.7
Ciclev10031514m.g Citrus clementina HOM05D002639 ORTHO05D010823 1.2e-20 105.5 298 26.5
Sabra17G0002000 Salix brachista HOM05D008396 ORTHO05D018844 1.4e-18 98.6 140 36.4
Sabra17G0014800 Salix brachista HOM05D008396 ORTHO05D009908 1.4e-18 98.6 140 36.4
FvH4_7g31231 Fragaria vesca HOM05D017852 ORTHO05D010823 4.1e-18 97.1 250 27.2
FAN05G1903 Fragaria x ananassa HOM05D017852 ORTHO05D010823 4.1e-18 97.1 243 27.2
FvH4_6g28332 Fragaria vesca HOM05D017852 ORTHO05D010823 9.2e-18 95.9 244 26.6
Prupe.5G238300 Prunus persica HOM05D004096 ORTHO05D000898 1.6e-17 95.1 273 28.9
FAN27G2266 Fragaria x ananassa HOM05D017852 ORTHO05D010823 2.9e-16 90.9 138 35.5
Hma1.2p1_0359F.1_g135000 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 2.9e-16 90.9 264 25.0
CANSAT64G0311 Cannabis sativa HOM05D009769 ORTHO05D010823 1.5e-15 88.6 262 26.0
Dinv01242 Davidia involucrata HOM05D010363 ORTHO05D008693 1.8e-13 81.6 215 28.4
Prupe.2G063700 Prunus persica HOM05D017852 ORTHO05D012232 4.0e-13 80.5 145 34.5
FAN09G4807 Fragaria x ananassa HOM05D004096 ORTHO05D029602 5.2e-13 80.1 256 28.5
arahy.Tifrunner.gnm1.ann1.RSA1RP Arachis hypogaea HOM05D008645 ORTHO05D007788 1.2e-12 79.0 246 26.4
Dinv09269 Davidia involucrata HOM05D008396 ORTHO05D000898 1.5e-12 78.6 215 24.7
QL10p051876 Quercus lobata HOM05D022192 ORTHO05D009908 2.0e-12 78.2 207 30.0
CANSAT01G0411 Cannabis sativa HOM05D009769 ORTHO05D010823 2.6e-12 77.8 215 27.0
FAN09G4395 Fragaria x ananassa HOM05D004096 ORTHO05D025475 2.6e-12 77.8 143 33.6
Prupe.7G017400 Prunus persica HOM05D004096 ORTHO05D000898 2.6e-12 77.8 226 27.0
FvH4_2g27910 Fragaria vesca HOM05D004096 ORTHO05D025475 4.4e-12 77.0 110 38.2
CANSAT21G2496 Cannabis sativa HOM05D009769 ORTHO05D010823 9.8e-12 75.9 263 25.5
Manes.10G138200 Manihot esculenta HOM05D000009 ORTHO05D000008 1.3e-11 75.5 207 25.6
Medtr4g007830 Medicago truncatula HOM05D011457 ORTHO05D007788 1.3e-11 75.5 251 25.5
Dinv17345 Davidia involucrata HOM05D008396 ORTHO05D000898 1.7e-11 75.1 139 32.4
SGA_v2.0_scaffold142G35697 Striga asiatica HOM05D017631 ORTHO05D009908 2.9e-11 74.3 272 25.7
FvH4_2g09470 Fragaria vesca HOM05D004096 ORTHO05D010213 4.9e-11 73.6 249 26.1
SGA_v2.0_scaffold540G52806 Striga asiatica HOM05D017631 ORTHO05D009908 4.9e-11 73.6 255 25.1
Dinv01422 Davidia involucrata HOM05D008396 ORTHO05D000898 6.4e-11 73.2 164 26.2
FvH4_4g05321 Fragaria vesca HOM05D004096 ORTHO05D000898 6.4e-11 73.2 242 24.4
FAN16G0074 Fragaria x ananassa HOM05D007993 ORTHO05D000898 6.4e-11 73.2 226 28.8
Manes.10G112309 Manihot esculenta HOM05D000009 ORTHO05D000008 6.4e-11 73.2 291 24.4
SGA_v2.0_scaffold81G26003 Striga asiatica HOM05D017631 ORTHO05D009908 8.3e-11 72.8 256 25.8
FAN13G0792 Fragaria x ananassa HOM05D017852 ORTHO05D000898 1.1e-10 72.4 138 31.2
Sed0000099 Sechium edule HOM05D002639 ORTHO05D003094 1.4e-10 72.0 234 26.1
RcHm_v2.0_Chr6g0268131 Rosa chinensis HOM05D010142 ORTHO05D012232 1.8e-10 71.6 299 26.1
HanXRQChr03g0081551 Helianthus annuus HOM05D002639 ORTHO05D003094 2.4e-10 71.2 230 27.0
Lj6A677T76 Lonicera japonica HOM05D002639 ORTHO05D003094 2.4e-10 71.2 183 27.9
Ca_01932_v3 Cicer arietinum L. HOM05D002639 ORTHO05D003094 3.2e-10 70.9 230 28.3
ECA240G4557 Erigeron canadensis HOM05D002639 ORTHO05D003094 4.1e-10 70.5 229 25.3
FAN22G0264 Fragaria x ananassa HOM05D004096 ORTHO05D018844 4.1e-10 70.5 110 32.7
Psat1g154240 Pisum sativum HOM05D002639 ORTHO05D003094 7.0e-10 69.7 227 26.9
Solyc12g099530.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 7.0e-10 69.7 225 26.7
Sopen12g034210 Solanum pennellii HOM05D002639 ORTHO05D003094 7.0e-10 69.7 225 26.7
Cc03_g01820 Coffea canephora HOM05D002639 ORTHO05D003094 9.2e-10 69.3 244 25.0
Mapoly0071s0122 Marchantia polymorpha HOM05D002639 ORTHO05D003094 9.2e-10 69.3 256 25.0
SGA_v2.0_scaffold74G24629 Striga asiatica HOM05D017631 ORTHO05D009908 9.2e-10 69.3 223 27.8
FAN24G1357 Fragaria x ananassa HOM05D004096 ORTHO05D012232 1.2e-09 68.9 143 30.8
RcHm_v2.0_Chr3g0451001 Rosa chinensis HOM05D009478 ORTHO05D010213 1.2e-09 68.9 254 25.2
arahy.Tifrunner.gnm1.ann1.5WRS92 Arachis hypogaea HOM05D008645 ORTHO05D007788 1.6e-09 68.6 189 25.4
FvH4_3g37244 Fragaria vesca HOM05D004096 ORTHO05D010213 2.0e-09 68.2 254 25.6
Lsat_1_v5_gn_5_62580 Lactuca sativa HOM05D002639 ORTHO05D003094 2.7e-09 67.8 228 25.0
arahy.Tifrunner.gnm1.ann1.6XKL96 Arachis hypogaea HOM05D008645 ORTHO05D007788 4.6e-09 67.0 213 24.9
CiPaw.02G082600 Carya illinoinensis HOM05D002639 ORTHO05D003094 4.6e-09 67.0 179 26.8
arahy.Tifrunner.gnm1.ann1.Y9CTG1 Arachis hypogaea HOM05D008645 ORTHO05D007788 5.9e-09 66.6 239 23.4
Nitab4.5_0000570g0140 Nicotiana tabacum HOM05D002639 ORTHO05D003094 5.9e-09 66.6 229 26.2
Medtr2g436660 Medicago truncatula HOM05D002639 ORTHO05D003094 7.8e-09 66.2 227 25.6
CANSAT56G2158 Cannabis sativa HOM05D009769 ORTHO05D010823 1.0e-08 65.9 278 24.1
Sed0005683 Sechium edule HOM05D002639 ORTHO05D003094 1.0e-08 65.9 232 25.0
Nitab4.5_0003466g0130 Nicotiana tabacum HOM05D002639 ORTHO05D003094 1.7e-08 65.1 212 25.9
ATR0796G180 Amborella trichopoda HOM05D002639 ORTHO05D003094 2.3e-08 64.7 228 26.8
Thhalv10025061m.g Eutrema salsugineum HOM05D002639 ORTHO05D003094 2.3e-08 64.7 182 29.1
Haze_01193 Corylus avellana HOM05D002639 ORTHO05D003094 3.9e-08 63.9 174 27.0
Dinv19544 Davidia involucrata HOM05D008396 ORTHO05D000898 3.9e-08 63.9 245 20.8
Glyma.15G148700 Glycine max HOM05D002639 ORTHO05D003094 3.9e-08 63.9 183 27.3
TWI53G0486 Tripterygium wilfordii HOM05D002639 ORTHO05D003094 3.9e-08 63.9 179 26.8
FAN23G0071 Fragaria x ananassa HOM05D010142 ORTHO05D012232 5.0e-08 63.5 272 21.7
Oeu035678.1 Olea europaea HOM05D002639 ORTHO05D003094 5.0e-08 63.5 206 27.2
CANSAT25G3518 Cannabis sativa HOM05D009769 ORTHO05D010823 8.6e-08 62.8 261 24.1
FAN05G3432 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.1e-07 62.4 155 29.7
FAN25G3308 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.1e-07 62.4 155 29.7
RhsimUnG0240000 Rhododendron simsii HOM05D009719 ORTHO05D011041 1.5e-07 62.0 103 35.0
Sopen06g019000 Solanum pennellii HOM05D000541 ORTHO05D000137 1.9e-07 61.6 161 23.6
FAN16G1984 Fragaria x ananassa HOM05D010142 ORTHO05D012232 2.5e-07 61.2 278 21.6
PSO675G4138 Papaver somniferum HOM05D002639 ORTHO05D003094 2.5e-07 61.2 202 25.7
arahy.Tifrunner.gnm1.ann1.AXL83M Arachis hypogaea HOM05D008645 ORTHO05D007788 3.3e-07 60.8 240 24.6
FAN03G2350 Fragaria x ananassa HOM05D007993 ORTHO05D000898 3.3e-07 60.8 220 27.7
Rhsim12G0083900 Rhododendron simsii HOM05D009719 ORTHO05D011041 3.3e-07 60.8 103 34.0
SGA_v2.0_scaffold428G51524 Striga asiatica HOM05D002639 ORTHO05D003094 3.3e-07 60.8 215 24.7
CANSAT78G1808 Cannabis sativa HOM05D009769 ORTHO05D010823 5.6e-07 60.1 141 29.8
FAN07G1300 Fragaria x ananassa HOM05D007993 ORTHO05D000898 5.6e-07 60.1 220 27.3
FAN13G0573 Fragaria x ananassa HOM05D011469 ORTHO05D014217 5.6e-07 60.1 163 27.6
FAN14G0071 Fragaria x ananassa HOM05D007993 ORTHO05D000898 7.3e-07 59.7 142 31.7
Carub.0007s2578 Capsella rubella HOM05D002639 ORTHO05D003094 1.2e-06 58.9 378 23.3
FAN14G0448 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.2e-06 58.9 246 21.5
FAN18G3521 Fragaria x ananassa HOM05D011469 ORTHO05D014217 1.2e-06 58.9 163 27.6
FAN28G1618 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.6e-06 58.5 142 31.7
FAN19G1351 Fragaria x ananassa HOM05D007993 ORTHO05D000898 2.1e-06 58.2 142 31.7
FAN05G5253 Fragaria x ananassa HOM05D010142 ORTHO05D012232 2.8e-06 57.8 244 21.3
FAN20G0479 Fragaria x ananassa HOM05D004096 ORTHO05D025475 2.8e-06 57.8 250 20.8
Atru.chr5.2180 Acer truncatum HOM05D004096 ORTHO05D000898 4.7e-06 57.0 260 24.2
Dinv07106 Davidia involucrata HOM05D008396 ORTHO05D000898 6.2e-06 56.6 135 25.9
FAN04G1460 Fragaria x ananassa HOM05D007993 ORTHO05D000898 6.2e-06 56.6 142 31.0
FAN13G2842 Fragaria x ananassa HOM05D009478 ORTHO05D010213 6.2e-06 56.6 268 23.5
Cfa015393 Carpinus fangiana HOM05D002639 ORTHO05D003094 8.0e-06 56.2 165 25.5
FAN09G2456 Fragaria x ananassa HOM05D004096 ORTHO05D010213 8.0e-06 56.2 140 30.0
Nn3g19359 Nelumbo nucifera HOM05D002639 ORTHO05D003094 8.0e-06 56.2 431 19.5


User provided reference genes

Program Settings