Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1599.3 858 100.0
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1254.2 877 76.1
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1253.8 875 73.8
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1252.7 884 73.6
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1252.7 877 76.3
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1245.3 872 73.6
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1241.1 873 75.1
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1240.7 877 74.5
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1235.3 874 72.3
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1232.6 915 71.4
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1229.5 872 72.7
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1229.5 863 73.5
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1228.8 872 73.1
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1228.4 872 72.5
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1228.4 886 71.8
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1227.6 875 72.5
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1227.6 889 72.7
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1227.6 884 71.3
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1224.5 875 73.5
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1224.5 882 72.2
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1224.2 862 73.0
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1224.2 909 70.2
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1223.8 940 69.3
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1223.8 876 72.9
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1223.4 875 75.1
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1219.9 862 72.4
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1218.0 862 72.9
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 930 68.8
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1211.8 864 73.0
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1209.5 871 72.4
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1209.1 861 72.4
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1202.6 856 72.9
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1202.2 902 70.7
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1202.2 872 71.6
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1201.4 901 69.7
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1201.4 863 71.6
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 863 71.6
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 893 70.1
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1198.3 845 73.5
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 915 69.9
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1194.1 864 70.6
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 923 70.4
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 888 73.6
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1191.4 872 70.8
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 888 70.6
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1189.9 904 69.0
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1188.3 908 68.7
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1187.2 876 72.0
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1186.8 930 69.1
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1185.2 930 69.0
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1184.9 902 68.2
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1184.5 915 69.8
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1184.1 930 68.9
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1182.5 873 72.6
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1180.2 900 68.3
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1180.2 869 72.7
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1179.5 869 70.0
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1178.7 859 72.9
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1177.9 861 71.9
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1177.5 831 72.1
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1176.8 892 68.0
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 897 68.2
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1173.3 923 69.6
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1171.0 865 69.1
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1168.7 841 72.2
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1168.3 929 67.5
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1167.5 905 68.0
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1167.5 907 67.5
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1167.1 859 72.8
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1166.4 903 67.8
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1164.4 877 71.2
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1163.7 892 67.7
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1162.5 855 71.2
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1162.5 918 67.8
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 843 69.4
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1160.2 820 72.7
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1159.4 888 69.0
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1156.7 912 66.4
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1154.8 908 67.2
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1153.7 868 69.6
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1153.7 865 68.9
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1152.9 950 65.4
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1152.1 876 69.5
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1149.8 908 67.1
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1149.8 873 69.3
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1148.7 869 73.0
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1147.1 867 68.1
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1146.7 924 66.0
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1145.6 905 67.1
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1134.4 823 71.1
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1125.5 928 64.8
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1125.2 840 68.8
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1124.8 863 67.8
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1118.6 865 67.9
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1115.5 858 67.6
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1114.8 1003 59.8
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1109.0 970 63.0
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1104.7 876 67.2
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1102.4 827 70.1
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1100.9 894 69.7
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1099.7 943 63.5
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1099.3 894 69.6
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1086.6 852 67.5
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1085.1 954 62.7
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1083.2 834 68.6
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1082.0 920 62.7
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1079.3 829 67.6
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.1e-304 1048.9 762 69.4
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.0e-302 1042.3 817 69.5
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 5.4e-300 1034.2 865 61.5
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 7.6e-294 1013.8 858 63.4
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 6.9e-279 964.1 713 67.6
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.6e-275 953.0 747 70.4
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.1e-273 946.8 871 65.1
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 2.5e-273 945.7 896 59.6
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 7.2e-268 927.5 715 69.4
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 7.9e-267 924.1 725 65.8
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 9.7e-265 917.1 838 56.3
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 2.8e-264 915.6 969 57.7
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 6.5e-261 904.4 872 56.7
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 1.4e-260 903.3 573 77.0
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.6e-254 882.5 505 84.0
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 3.2e-252 875.5 837 56.2
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 8.6e-229 797.7 686 62.5
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 3.0e-189 666.4 628 58.1
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 6.2e-171 605.5 384 76.3
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 9.0e-170 601.7 371 77.6
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 1.2e-169 601.3 543 63.2
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.6e-166 589.3 341 81.5
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.3e-165 587.0 352 81.0
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 6.5e-160 568.9 360 76.1
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 6.3e-147 525.8 442 63.6
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.5e-143 513.8 542 56.6
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 3.6e-134 483.4 687 42.8
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 2.2e-128 464.2 984 38.0
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.1e-127 461.8 838 36.9
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.7e-123 448.0 305 73.4
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 4.1e-106 390.2 297 66.7
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 9.2e-106 389.0 499 50.7
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.0e-100 371.3 450 52.0
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 5.8e-100 369.8 1028 30.1
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.4e-90 338.6 529 41.2
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.2e-75 288.1 356 55.1
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 1.9e-71 275.0 164 80.5
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 3.9e-48 197.6 327 39.8
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 8.2e-46 189.9 152 73.7
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 5.5e-42 177.2 104 81.7
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 8.5e-35 153.3 106 67.9
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.2e-34 151.4 107 71.0
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 6.1e-33 147.1 103 72.8
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 1.0e-24 119.8 86 70.9
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 5.9e-20 104.0 77 63.6
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 3.8e-19 101.3 61 77.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-17 95.5 94 56.4
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 8.0e-17 93.6 94 56.4
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 9.7e-15 86.7 91 50.5
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 6.3e-14 84.0 68 75.0
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.3e-13 80.9 45 80.0
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.9e-10 72.4 53 71.7
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 6.1e-09 67.4 66 48.5
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 1.0e-08 66.6 58 53.4
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 1.4e-08 66.2 41 65.9
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.2e-07 63.2 52 59.6


User provided reference genes

Program Settings