Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 1.1e-211 739.6 353 100.0
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 2.2e-194 682.2 354 92.7
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 2.7e-181 638.6 354 85.3
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 4.8e-178 627.9 354 84.5
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 9.1e-177 623.6 354 82.8
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 2.2e-175 619.0 354 82.5
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 1.4e-172 609.8 354 82.2
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 5.2e-172 607.8 354 80.2
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 1.5e-171 606.3 354 79.4
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 4.4e-171 604.7 353 79.9
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.3e-170 603.2 353 79.9
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.7e-170 601.7 353 79.9
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 4.8e-170 601.3 353 79.6
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 6.3e-170 600.9 354 79.1
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 1.1e-169 600.1 354 79.9
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.4e-169 599.7 353 80.2
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 3.1e-169 598.6 354 79.7
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 5.4e-169 597.8 354 79.1
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 7.7e-168 594.0 354 79.4
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 1.0e-167 593.6 355 78.3
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 2.2e-167 592.4 354 78.2
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.8e-167 591.7 352 79.0
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 8.5e-167 590.5 352 78.1
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.5e-166 589.7 352 77.8
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 3.2e-166 588.6 354 78.8
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 7.2e-166 587.4 354 78.5
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 9.5e-166 587.0 353 79.0
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.2e-165 586.6 354 78.0
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 1.6e-165 586.3 354 78.5
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 4.7e-165 584.7 353 77.1
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 6.1e-165 584.3 364 77.7
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 1.8e-164 582.8 354 78.5
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 4.0e-164 581.6 354 76.6
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 8.8e-164 580.5 352 77.3
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 8.8e-164 580.5 352 77.3
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 1.2e-163 580.1 352 76.1
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 1.2e-163 580.1 354 76.6
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 2.6e-163 578.9 352 76.7
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 2.6e-163 578.9 354 77.7
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 2.6e-163 578.9 354 76.3
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 4.4e-163 578.2 341 78.0
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 7.5e-163 577.4 354 77.4
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 1.3e-162 576.6 354 77.7
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 1.7e-162 576.2 341 79.5
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.8e-162 575.5 352 76.1
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.4e-161 571.2 354 76.8
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 5.4e-161 571.2 356 74.2
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 7.0e-161 570.9 354 76.6
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 5.9e-160 567.8 353 77.6
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.9e-158 562.8 359 74.1
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 7.3e-158 560.8 354 75.1
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.2e-157 560.1 354 74.0
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 1.6e-157 559.7 354 75.1
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 1.6e-157 559.7 354 75.1
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 2.1e-157 559.3 354 74.6
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 4.7e-157 558.1 341 76.5
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 8.0e-157 557.4 352 72.7
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.4e-156 556.6 354 75.1
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 1.4e-156 556.6 340 76.5
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 3.0e-156 555.4 356 74.7
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 5.2e-156 554.7 354 74.6
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 5.2e-156 554.7 354 73.7
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.2e-155 553.5 354 74.0
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 3.4e-155 552.0 354 73.4
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 1.3e-154 550.1 353 72.2
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 3.7e-154 548.5 354 73.2
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 4.9e-154 548.1 349 72.5
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 4.9e-154 548.1 354 73.2
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 1.1e-153 547.0 352 73.3
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 1.1e-153 547.0 355 73.2
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 1.4e-153 546.6 354 74.6
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 1.8e-153 546.2 340 75.0
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 3.2e-153 545.4 321 78.8
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 5.4e-153 544.7 354 73.7
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 7.0e-153 544.3 354 73.4
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 2.7e-152 542.3 354 71.8
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.7e-152 542.3 376 69.4
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 5.9e-152 541.2 354 73.7
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 7.8e-152 540.8 354 73.4
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 5.0e-151 538.1 354 73.2
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 5.0e-151 538.1 354 73.2
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 8.6e-151 537.3 354 73.4
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 1.9e-150 536.2 342 75.4
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 6.8e-148 527.7 321 78.2
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.5e-147 526.6 321 76.3
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 2.6e-147 525.8 354 71.5
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 2.2e-146 522.7 385 67.3
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 3.2e-145 518.8 341 71.0
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.4e-145 518.1 354 70.6
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 2.7e-144 515.8 354 68.1
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.3e-143 513.5 410 61.2
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 2.3e-143 512.7 340 71.5
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.9e-142 509.6 294 78.9
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 4.7e-141 505.0 309 75.4
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 4.7e-141 505.0 309 75.4
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 6.8e-140 501.1 348 68.4
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.2e-139 500.4 295 78.0
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.6e-136 490.0 340 65.3
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 2.7e-136 489.2 321 70.7
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 3.3e-134 482.3 355 63.4
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 4.0e-132 475.3 321 71.7
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 5.2e-132 474.9 357 62.2
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 1.7e-130 469.9 306 72.2
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 6.0e-128 461.5 298 72.8
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 7.8e-128 461.1 269 79.6
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 3.9e-127 458.8 355 60.0
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.5e-123 446.8 398 58.8
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 4.4e-123 445.3 255 79.6
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 8.4e-122 441.0 325 66.2
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 3.5e-120 435.6 265 78.9
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 3.1e-108 396.0 354 58.2
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 5.3e-108 395.2 223 83.4
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.3e-95 354.0 201 80.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.1e-86 324.3 180 82.8
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 5.3e-84 315.5 205 73.7
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 3.8e-82 309.3 360 42.2
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 1.1e-81 307.8 234 61.5
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 3.0e-79 299.7 355 41.1
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.1e-73 281.2 158 79.7
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 2.1e-72 276.9 356 38.8
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.5e-70 270.8 212 62.3
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 6.3e-69 265.4 198 64.1
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.0e-55 219.5 144 68.1
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.9e-50 203.4 128 78.1
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 5.0e-50 202.6 126 75.4
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.9e-49 200.7 363 30.0
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 8.3e-45 185.3 108 77.8
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 3.8e-42 176.4 85 95.3
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 9.5e-41 171.8 131 64.9
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 6.4e-37 159.1 227 41.9
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 7.5e-30 135.6 306 27.8
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 6.6e-26 122.5 78 76.9
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.6e-24 117.9 72 69.4
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.6e-24 116.7 82 61.0
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.4e-22 110.2 74 68.9
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.4e-21 105.9 72 66.7
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 2.4e-20 104.0 207 30.4
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 5.2e-15 86.3 365 23.6
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 5.2e-15 86.3 220 24.5
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.5e-14 84.7 44 84.1
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 1.5e-14 84.7 58 62.1
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 9.9e-14 82.0 54 74.1
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.3e-13 81.6 59 64.4
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 8.4e-13 79.0 149 35.6
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 9.2e-12 75.5 264 22.7
Ah.01g008430 Amaranthus hybridus HOM05D000347 ORTHO05D001997 1.6e-11 74.7 190 23.7
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 1.6e-11 74.7 167 25.1
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.7e-10 71.2 218 23.9
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 3.0e-10 70.5 212 24.1
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 3.9e-10 70.1 218 22.9
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 1.9e-09 67.8 216 24.5
SMO347G0508 Selaginella moellendorffii HOM05D001978 ORTHO05D003036 7.3e-09 65.9 216 25.0
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.6e-08 64.7 42 69.0
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 3.6e-08 63.5 71 35.2
Potri.018G068200 Populus trichocarpa HOM05D002302 ORTHO05D002728 1.1e-07 62.0 160 25.0
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 1.4e-07 61.6 157 24.8
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 1.8e-07 61.2 35 65.7
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.4e-07 60.8 42 61.9
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 9.0e-07 58.9 50 60.0
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 2.0e-06 57.8 150 21.3
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 2.0e-06 57.8 150 21.3
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 2.0e-06 57.8 212 20.8
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 4.4e-06 56.6 150 21.3
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 4.4e-06 56.6 150 21.3
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.4e-06 56.6 30 73.3
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 7.6e-06 55.8 46 54.3


User provided reference genes

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