Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 0.0e+00 1655.2 902 100.0
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 3.6e-286 988.4 893 62.2
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 8.0e-286 987.3 908 61.8
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 7.0e-282 974.2 907 60.5
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.8e-277 959.5 895 61.7
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.8e-277 959.5 904 61.9
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 9.2e-274 947.2 869 63.2
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.7e-272 943.0 869 62.7
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 5.0e-272 941.4 911 60.4
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.6e-271 937.9 921 59.7
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.2e-268 930.2 898 58.9
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.2e-268 930.2 888 59.7
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.2e-268 930.2 883 59.3
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 1.5e-268 929.9 888 59.7
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 7.5e-268 927.5 916 59.6
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 2.2e-267 926.0 905 59.3
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.9e-266 922.9 903 58.7
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 2.4e-266 922.5 917 58.2
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 2.4e-266 922.5 899 59.6
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 3.5e-265 918.7 895 59.1
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.3e-264 916.8 911 59.2
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.0e-264 915.6 895 58.8
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 6.6e-264 914.4 927 57.6
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.6e-263 911.4 889 58.6
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 4.7e-262 908.3 911 57.4
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.2e-262 907.9 907 59.2
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 4.4e-260 901.7 907 60.1
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 5.8e-260 901.4 907 60.0
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.9e-259 899.0 927 57.2
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.4e-259 897.5 895 58.4
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 9.2e-258 894.0 927 56.1
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 2.1e-257 892.9 900 57.2
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 7.8e-257 891.0 897 58.1
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.7e-256 889.8 912 58.6
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 5.6e-255 884.8 858 58.9
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 6.2e-254 881.3 914 56.8
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 8.1e-254 880.9 893 56.1
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 2.4e-253 879.4 919 57.0
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 4.0e-253 878.6 863 57.8
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 3.8e-251 872.1 894 56.4
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.4e-250 869.4 911 56.8
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 4.2e-250 868.6 915 56.4
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 7.1e-250 867.8 905 55.4
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 7.3e-247 857.8 895 56.9
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.4e-245 853.6 910 54.9
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 5.3e-245 851.7 882 56.8
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 7.6e-244 847.8 891 57.7
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.3e-243 847.0 902 56.4
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.8e-243 845.5 907 55.3
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 3.8e-243 845.5 921 55.7
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.2e-241 840.5 890 57.6
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.2e-241 840.5 905 56.7
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 7.9e-241 837.8 882 57.5
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.3e-240 837.0 902 55.0
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 8.7e-240 834.3 901 55.7
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 2.5e-239 832.8 888 57.7
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 2.5e-239 832.8 917 54.0
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 3.3e-239 832.4 927 56.6
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 6.2e-238 828.2 904 55.2
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 4.0e-237 825.5 897 55.9
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 4.0e-237 825.5 898 54.6
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 3.4e-236 822.4 918 53.6
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.7e-235 820.1 891 55.2
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.1e-234 817.4 917 53.9
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.2e-233 813.9 857 56.7
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 2.3e-232 809.7 902 53.7
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 4.3e-231 805.4 888 55.4
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 4.3e-231 805.4 866 55.4
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 5.6e-231 805.1 897 54.8
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 6.2e-230 801.6 884 54.3
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.1e-229 800.8 890 53.5
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 1.5e-228 797.0 902 54.3
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 2.6e-228 796.2 915 52.8
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 2.9e-227 792.7 880 54.1
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 6.5e-227 791.6 810 56.2
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 1.1e-226 790.8 888 53.8
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 5.5e-226 788.5 878 54.6
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 7.1e-226 788.1 828 57.7
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 9.3e-226 787.7 872 54.1
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 3.1e-221 772.7 876 54.2
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 6.9e-221 771.5 876 53.8
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.2e-220 770.8 913 51.0
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 2.2e-219 766.5 872 52.3
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.6e-217 760.4 871 53.7
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 3.0e-216 756.1 725 58.3
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.3e-214 750.7 879 52.9
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.8e-214 748.8 871 53.4
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 5.3e-213 745.3 879 52.8
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 2.0e-212 743.4 871 52.5
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.0e-211 741.1 788 55.3
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.9e-210 736.9 863 50.9
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 8.8e-208 728.0 881 49.8
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-207 727.6 876 50.8
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 4.1e-205 719.2 883 50.3
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 6.9e-205 718.4 867 50.2
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 2.1e-201 706.8 863 49.9
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 2.7e-201 706.4 878 50.0
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 7.9e-201 704.9 864 49.0
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 5.2e-200 702.2 900 49.0
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 2.2e-198 696.8 888 49.1
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 2.8e-198 696.4 879 49.8
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 9.1e-197 691.4 780 53.6
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 2.6e-196 689.9 895 49.2
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 3.5e-196 689.5 663 58.8
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 7.7e-196 688.3 830 50.8
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 1.3e-190 671.0 901 46.9
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 7.7e-188 661.8 878 47.9
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 2.7e-185 653.3 732 53.3
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.3e-182 644.4 878 47.4
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.1e-181 639.4 894 47.2
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.6e-180 637.5 838 49.3
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.0e-168 596.7 616 54.9
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 1.5e-167 594.3 561 60.6
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 5.4e-165 585.9 869 45.1
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 9.2e-165 585.1 655 55.0
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 5.6e-162 575.9 885 44.7
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 3.4e-159 566.6 886 43.8
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 5.2e-152 542.7 1034 38.1
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.1e-136 491.9 832 41.6
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 3.9e-131 473.4 406 63.5
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 2.8e-129 467.2 436 60.1
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 8.1e-121 439.1 770 40.5
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 5.3e-120 436.4 924 35.4
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 2.2e-118 431.0 1047 35.1
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 8.7e-107 392.5 975 34.7
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 5.9e-103 379.8 460 51.5
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.8e-99 368.2 346 57.8
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 8.7e-99 365.9 249 74.7
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 4.3e-98 363.6 344 58.4
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.8e-97 360.1 283 66.8
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 8.2e-97 359.4 993 30.9
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 3.7e-89 334.0 594 42.6
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-87 328.6 897 32.2
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 1.5e-87 328.6 897 32.2
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 5.2e-75 287.0 983 27.8
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.2e-71 275.8 213 67.6
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.0e-70 272.7 188 73.4
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 8.8e-67 259.6 366 45.6
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.9e-61 241.9 755 29.8
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.7e-57 228.8 408 41.2
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 7.0e-56 223.4 323 47.1
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.2e-55 222.6 408 40.4
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.2e-55 222.6 429 41.7
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-55 222.2 419 41.8
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 1.7e-54 218.8 848 28.7
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 2.9e-54 218.0 371 41.2
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 3.7e-49 201.1 455 36.7
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 3.0e-46 191.4 408 39.2
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 1.2e-42 179.5 173 59.5
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 7.5e-42 176.8 318 42.8
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 4.9e-41 174.1 314 39.2
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.4e-41 173.7 178 56.7
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 8.3e-41 173.3 371 36.1
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.1e-40 172.9 182 54.4
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.5e-39 167.9 226 45.6
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 8.6e-38 163.3 153 55.6
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.5e-34 152.5 687 27.8
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 3.7e-33 147.9 242 40.9
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.9e-32 145.6 206 47.1
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 4.1e-32 144.4 316 37.3
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 5.4e-32 144.1 317 37.9
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 6.6e-30 137.1 137 52.6
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 8.6e-30 136.7 167 52.1
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.3e-29 134.4 163 41.7
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.1e-27 129.8 1150 21.6
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 5.2e-27 127.5 309 36.2
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.4e-26 124.8 130 56.2
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 9.9e-26 123.2 309 35.6
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 9.6e-21 106.7 121 52.1
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 1.2e-15 89.7 326 30.7
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 1.1e-11 76.6 84 58.3
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.3e-11 74.3 208 33.7
Cfa021652 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.7e-09 69.3 69 50.7
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 9.3e-08 63.5 348 26.1
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 9.3e-08 63.5 84 48.8
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 6.0e-07 60.8 129 37.2
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 1.3e-06 59.7 94 41.5
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 6.7e-06 57.4 57 57.9


User provided reference genes

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