Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.7e-151 539.3 262 100.0
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 3.7e-151 538.1 262 99.6
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 3.9e-116 421.8 259 77.2
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 5.1e-116 421.4 257 77.4
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 6.7e-116 421.0 260 75.4
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.3e-114 416.8 260 75.4
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.3e-114 416.8 258 76.4
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 2.8e-114 415.6 258 75.6
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 3.7e-114 415.2 259 75.7
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 6.2e-114 414.5 258 76.4
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.1e-113 413.7 258 75.6
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 2.4e-113 412.5 258 74.8
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 3.1e-113 412.1 258 74.0
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 4.0e-113 411.8 264 74.2
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.3e-113 411.4 259 75.7
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 6.9e-113 411.0 259 75.3
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.2e-112 410.2 258 74.4
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 2.6e-112 409.1 259 75.3
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 7.6e-112 407.5 274 70.8
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 3.8e-111 405.2 258 74.8
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 8.4e-111 404.1 258 74.0
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.5e-110 401.4 258 72.9
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 7.1e-110 401.0 260 72.3
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.6e-109 399.8 258 72.5
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.6e-109 399.8 257 72.4
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.7e-109 399.1 255 74.1
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.5e-109 398.7 260 72.7
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.5e-109 398.7 258 72.9
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.5e-109 398.7 260 72.7
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 4.6e-109 398.3 260 72.7
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.0e-108 397.1 258 71.7
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.0e-108 397.1 258 72.5
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.3e-108 396.7 262 73.7
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 2.3e-108 396.0 258 72.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 2.3e-108 396.0 258 70.9
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.0e-108 395.6 258 72.9
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 8.7e-108 394.0 267 70.0
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 8.7e-108 394.0 259 72.2
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.9e-107 392.9 258 72.1
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 2.5e-107 392.5 275 69.1
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 2.5e-107 392.5 266 70.3
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 3.3e-107 392.1 258 72.1
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 9.6e-107 390.6 259 70.7
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 9.6e-107 390.6 255 71.8
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.1e-106 389.4 258 71.7
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.8e-106 389.0 259 71.0
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 3.7e-106 388.7 265 70.6
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 4.8e-106 388.3 259 73.0
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 6.2e-106 387.9 259 70.3
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 8.2e-106 387.5 258 70.9
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.1e-105 387.1 258 69.8
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.4e-105 386.7 260 69.6
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.4e-105 386.7 258 71.3
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.8e-105 386.3 257 71.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.4e-105 386.0 259 71.8
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 4.0e-105 385.2 259 70.7
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 4.0e-105 385.2 258 70.9
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 5.3e-105 384.8 261 69.3
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 5.3e-105 384.8 258 70.5
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 9.0e-105 384.0 258 69.4
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 9.0e-105 384.0 258 69.4
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 9.0e-105 384.0 258 69.4
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 9.0e-105 384.0 258 71.7
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.2e-104 383.6 273 67.8
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.5e-104 383.3 258 69.8
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 3.4e-104 382.1 259 70.7
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 3.4e-104 382.1 259 70.7
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 4.5e-104 381.7 259 71.0
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 4.5e-104 381.7 257 70.4
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.0e-103 380.6 264 68.2
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.3e-103 380.2 259 70.3
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.7e-103 379.8 259 69.1
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 2.2e-103 379.4 256 69.5
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 2.9e-103 379.0 265 67.2
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 3.8e-103 378.6 257 70.4
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 8.4e-103 377.5 261 68.6
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.1e-102 377.1 257 70.0
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 1.1e-102 377.1 258 69.0
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 1.4e-102 376.7 266 66.9
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.9e-102 376.3 259 68.0
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 5.5e-102 374.8 262 69.5
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 5.5e-102 374.8 257 66.9
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 9.3e-102 374.0 259 70.3
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 9.3e-102 374.0 258 68.6
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.2e-101 373.6 258 69.4
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.6e-101 373.2 265 67.9
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.6e-101 373.2 260 68.8
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 4.6e-101 371.7 260 67.3
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.3e-100 370.2 257 67.7
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.8e-100 369.8 257 67.7
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.8e-100 369.8 259 66.4
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 3.9e-100 368.6 259 68.3
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.5e-99 366.7 318 57.9
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 3.3e-99 365.5 258 66.7
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 3.3e-99 365.5 256 69.5
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 7.4e-99 364.4 240 74.2
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.6e-98 363.2 263 66.2
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.6e-98 363.2 261 65.5
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.8e-98 362.5 258 65.9
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 4.8e-98 361.7 293 60.8
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 3.1e-97 359.0 271 63.8
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.2e-96 357.1 264 67.0
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 3.4e-96 355.5 260 64.2
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 4.5e-96 355.1 213 76.5
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 5.5e-94 348.2 212 75.0
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.2e-93 347.1 263 67.3
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.6e-93 346.7 216 72.7
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.6e-93 346.7 258 63.6
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 7.9e-93 344.4 258 64.3
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 5.7e-91 338.2 257 61.5
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 3.7e-90 335.5 259 63.7
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.1e-89 334.0 211 74.4
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.8e-89 333.2 238 68.1
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 3.1e-89 332.4 260 64.2
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 7.7e-88 327.8 211 70.1
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 5.0e-87 325.1 196 77.0
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.4e-86 323.6 272 56.2
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 3.6e-85 318.9 244 63.9
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 6.1e-85 318.2 194 76.8
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.6e-83 312.8 212 68.9
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 9.7e-83 310.8 192 77.6
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.3e-82 310.5 194 74.2
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 2.8e-82 309.3 190 74.7
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 7.7e-80 301.2 258 58.5
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 8.5e-79 297.7 204 70.1
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 8.5e-79 297.7 231 59.7
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 4.7e-77 292.0 180 75.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.0e-76 289.3 233 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.4e-73 279.6 230 56.1
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.4e-73 279.6 170 78.8
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 1.6e-72 276.9 233 60.5
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 5.9e-72 275.0 313 48.9
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.7e-69 266.2 363 43.5
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 3.7e-66 255.8 260 48.1
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 9.4e-62 241.1 182 65.4
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.0e-60 235.7 268 49.6
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.1e-57 225.7 231 48.5
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 9.1e-57 224.6 155 67.1
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 2.9e-55 219.5 218 53.2
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.3e-54 216.1 181 55.8
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.5e-46 190.7 178 51.7
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 2.5e-46 189.9 147 61.9
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.3e-46 189.1 126 67.5
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 5.6e-46 188.7 138 63.0
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 7.5e-43 178.3 276 37.0
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.3e-42 177.6 128 63.3
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.6e-37 160.6 103 72.8
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.5e-35 154.1 307 33.6
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 6.4e-34 148.7 96 68.8
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.2e-32 144.4 174 44.8
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 9.5e-30 134.8 172 47.7
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.6e-29 134.0 128 51.6
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 1.6e-29 134.0 248 33.9
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.1e-28 129.8 165 41.2
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.0e-27 127.1 103 60.2
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 4.4e-19 99.4 81 55.6
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.4e-18 95.5 120 43.3
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 1.9e-17 94.0 53 81.1
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 1.9e-17 94.0 53 81.1
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.2e-17 93.2 87 51.7
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 6.6e-15 85.5 57 68.4
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.1e-14 84.7 57 68.4
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 4.9e-10 69.3 55 60.0
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.9e-09 67.4 56 50.0
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.4e-09 65.9 36 83.3
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 6.6e-07 58.9 40 57.5
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 1.9e-06 57.4 40 60.0
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 1.9e-06 57.4 40 60.0


User provided reference genes

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