Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 6.2e-101 370.9 207 100.0
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 1.1e-52 210.7 213 63.8
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 9.1e-52 207.6 208 62.5
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.6e-51 206.8 208 63.5
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 8.6e-50 201.1 219 60.3
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.9e-49 199.9 216 58.8
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 3.3e-49 199.1 206 60.2
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 7.2e-49 198.0 208 62.5
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 9.5e-49 197.6 220 59.5
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.6e-48 196.8 212 60.4
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 2.8e-48 196.1 206 59.2
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.8e-48 196.1 174 65.5
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.8e-48 196.1 213 60.1
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 4.7e-48 195.3 206 60.7
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 4.7e-48 195.3 217 59.9
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.3e-47 193.0 220 59.1
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 5.2e-47 191.8 206 59.2
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 6.8e-47 191.4 180 62.8
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 6.8e-47 191.4 173 64.7
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 2.0e-46 189.9 206 58.7
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 3.4e-46 189.1 208 58.7
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 4.4e-46 188.7 205 58.0
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 5.7e-46 188.3 211 58.8
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 1.3e-45 187.2 210 57.6
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.8e-44 183.3 210 58.1
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.4e-44 181.8 204 55.9
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 9.2e-44 181.0 213 57.7
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.7e-43 179.5 193 60.1
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 3.5e-43 179.1 198 52.0
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 3.5e-43 179.1 216 57.4
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 3.5e-43 179.1 199 55.3
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 4.5e-43 178.7 206 55.3
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 7.8e-43 177.9 202 54.5
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 7.8e-43 177.9 162 67.9
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.0e-42 177.6 163 60.1
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.0e-42 177.6 193 59.6
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 2.3e-42 176.4 159 65.4
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 2.9e-42 176.0 163 66.9
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 6.6e-42 174.9 201 56.2
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 6.6e-42 174.9 198 57.6
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 8.6e-42 174.5 189 61.4
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.1e-41 174.1 204 52.9
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 2.5e-41 172.9 203 55.7
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 3.3e-41 172.6 202 54.5
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 3.3e-41 172.6 205 49.8
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 4.3e-41 172.2 209 56.0
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 7.3e-41 171.4 200 56.5
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 1.2e-40 170.6 189 54.5
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.6e-40 170.2 208 58.2
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 1.6e-40 170.2 171 52.0
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 1.6e-40 170.2 171 56.1
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.8e-40 169.5 200 56.5
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.8e-40 169.5 198 56.6
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 4.7e-40 168.7 207 55.1
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 4.7e-40 168.7 174 63.2
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 2.3e-39 166.4 192 55.7
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.5e-38 163.7 230 49.6
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 4.4e-38 162.2 163 63.2
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 4.4e-38 162.2 202 55.0
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 5.8e-38 161.8 163 63.2
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 1.7e-37 160.2 162 62.3
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 2.9e-37 159.5 164 60.4
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.9e-37 159.5 208 50.0
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.9e-37 159.5 162 59.9
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 4.9e-37 158.7 110 73.6
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 1.1e-36 157.5 210 53.3
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 1.1e-36 157.5 173 57.8
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.4e-36 157.1 112 71.4
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.4e-36 157.1 148 64.2
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 3.2e-36 156.0 172 59.3
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 5.4e-36 155.2 147 63.9
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 9.2e-36 154.5 211 53.6
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 2.0e-35 153.3 158 58.9
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 3.5e-35 152.5 178 53.4
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 3.9e-34 149.1 103 69.9
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 4.3e-33 145.6 175 50.9
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.8e-32 142.9 140 57.1
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 3.6e-32 142.5 206 51.9
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 8.0e-32 141.4 110 64.5
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 1.4e-31 140.6 109 62.4
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 5.2e-31 138.7 228 43.4
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 4.4e-30 135.6 164 56.7
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 1.3e-29 134.0 284 41.9
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.3e-29 134.0 210 48.1
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 6.4e-29 131.7 178 59.0
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 9.2e-28 127.9 96 63.5
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 5.1e-26 122.1 157 58.6
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 1.5e-25 120.6 153 56.9
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 1.6e-24 117.1 85 74.1
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 2.3e-23 113.2 73 78.1
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 4.0e-23 112.5 92 57.6
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.2e-22 110.9 110 52.7
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 1.2e-22 110.9 110 52.7
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 2.0e-22 110.2 109 56.0
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 3.4e-22 109.4 73 71.2
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.9e-21 106.3 109 53.2
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.9e-21 106.3 110 50.9
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 2.9e-21 106.3 95 57.9
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.9e-21 106.3 71 71.8
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 6.4e-21 105.1 95 56.8
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.1e-20 104.4 110 51.8
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 1.6e-19 100.5 89 59.6
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.1e-19 100.1 91 58.2
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 2.7e-19 99.8 61 82.0
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 3.5e-19 99.4 110 50.0
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 4.6e-19 99.0 145 38.6
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 4.6e-19 99.0 133 45.1
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 7.8e-19 98.2 89 58.4
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 7.8e-19 98.2 91 54.9
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.0e-18 97.8 89 57.3
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 2.3e-18 96.7 92 54.3
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 3.9e-18 95.9 91 52.7
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.9e-18 95.9 100 54.0
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 5.1e-18 95.5 89 55.1
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 5.1e-18 95.5 91 52.7
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 6.6e-18 95.1 91 52.7
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 8.6e-18 94.7 91 52.7
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.1e-17 94.4 91 52.7
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 1.9e-17 93.6 87 52.9
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 1.9e-17 93.6 91 52.7
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.9e-17 93.6 154 38.3
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 2.5e-17 93.2 194 35.1
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.5e-17 93.2 109 45.9
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 2.5e-17 93.2 109 45.9
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 2.5e-17 93.2 93 50.5
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 2.5e-17 93.2 89 55.1
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 4.3e-17 92.4 91 50.5
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 5.6e-17 92.0 91 56.0
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 1.2e-16 90.9 137 54.7
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 2.8e-16 89.7 110 46.4
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 6.2e-16 88.6 91 49.5
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 8.1e-16 88.2 88 54.5
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 8.1e-16 88.2 88 54.5
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 8.1e-16 88.2 107 44.9
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 1.1e-15 87.8 91 48.4
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 1.1e-15 87.8 91 48.4
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 1.1e-15 87.8 91 48.4
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 1.4e-15 87.4 114 61.4
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.4e-15 87.4 179 35.8
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 2.4e-15 86.7 91 48.4
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.4e-15 86.7 91 49.5
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.1e-15 86.3 91 48.4
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 5.2e-15 85.5 87 49.4
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 5.2e-15 85.5 89 52.8
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 5.2e-15 85.5 91 50.5
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 5.2e-15 85.5 91 49.5
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 6.8e-15 85.1 87 48.3
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 6.8e-15 85.1 60 66.7
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.2e-14 84.3 91 46.2
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.0e-14 83.6 91 46.2
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 2.6e-14 83.2 95 47.4
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 4.4e-14 82.4 78 56.4
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 5.8e-14 82.0 91 45.1
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.9e-13 79.7 89 49.4
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 3.3e-09 66.2 101 30.7
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 7.3e-09 65.1 87 37.9
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 1.6e-08 63.9 99 53.5
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 2.1e-08 63.5 61 52.5
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 6.2e-08 62.0 91 54.9
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 6.2e-08 62.0 85 42.4
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.1e-07 61.2 74 47.3
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 1.4e-07 60.8 50 56.0
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 5.3e-07 58.9 65 47.7
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 2.0e-06 57.0 54 57.4


User provided reference genes

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