Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 8.8e-113 410.2 196 100.0
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.5e-91 339.7 195 81.0
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.5e-91 337.8 194 80.9
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.5e-91 337.8 194 79.9
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 3.6e-90 335.1 195 80.0
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 4.7e-90 334.7 195 79.0
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 1.4e-89 333.2 195 80.0
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.8e-89 332.8 193 79.8
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 3.0e-89 332.0 195 80.0
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 8.9e-89 330.5 195 80.0
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.2e-88 330.1 195 79.5
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.5e-88 329.7 195 80.5
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.5e-88 329.7 195 80.5
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.5e-88 329.7 195 80.5
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 3.4e-88 328.6 195 79.0
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 3.4e-88 328.6 195 79.0
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 3.4e-88 328.6 195 79.0
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 3.4e-88 328.6 195 80.0
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 4.4e-88 328.2 199 77.9
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 9.8e-88 327.0 195 79.5
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.3e-87 326.6 199 77.4
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 4.9e-87 324.7 195 76.9
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 6.3e-87 324.3 194 73.7
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 8.3e-87 323.9 194 78.9
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.1e-86 323.6 195 79.5
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 3.1e-86 322.0 215 73.0
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 4.1e-86 321.6 191 75.9
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 7.0e-86 320.9 191 79.1
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 4.5e-85 318.2 193 74.6
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 1.0e-84 317.0 194 73.7
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 1.7e-84 316.2 179 81.0
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.9e-84 315.5 191 75.9
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.9e-84 315.5 195 76.4
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 2.9e-84 315.5 195 76.4
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 8.6e-84 313.9 195 73.8
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.1e-83 313.5 191 75.4
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.9e-83 312.8 195 73.3
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.9e-83 312.8 190 76.3
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 2.5e-83 312.4 195 75.9
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 2.5e-83 312.4 195 74.9
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 3.3e-83 312.0 195 73.3
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.3e-83 311.6 191 75.4
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 5.6e-83 311.2 192 71.9
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 7.3e-83 310.8 195 75.4
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 7.3e-83 310.8 195 74.4
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 2.8e-82 308.9 203 74.9
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 4.7e-82 308.1 192 72.4
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 4.7e-82 308.1 195 73.3
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 6.1e-82 307.8 195 74.9
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 8.0e-82 307.4 203 74.4
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 1.4e-81 306.6 190 71.1
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 2.3e-81 305.8 190 68.9
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 2.3e-81 305.8 191 72.8
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 3.0e-81 305.4 190 74.2
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 4.0e-81 305.1 195 71.8
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 8.9e-81 303.9 202 72.8
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 8.9e-81 303.9 202 72.3
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 1.5e-80 303.1 190 70.5
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.4e-80 302.0 195 70.8
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 1.3e-79 300.1 182 73.6
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 2.9e-79 298.9 189 69.8
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 1.1e-78 297.0 193 71.5
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.4e-78 296.6 193 72.0
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 1.9e-78 296.2 193 69.4
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.4e-78 295.8 195 70.8
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 4.1e-78 295.0 190 71.1
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 7.0e-78 294.3 192 69.8
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 7.0e-78 294.3 190 70.0
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 1.2e-77 293.5 190 72.1
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.6e-77 293.1 196 69.9
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 1.7e-76 289.7 196 69.4
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 3.9e-76 288.5 188 69.7
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 6.6e-76 287.7 191 67.5
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 2.5e-75 285.8 263 54.8
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 7.3e-75 284.3 194 67.5
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 7.3e-75 284.3 194 67.5
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 7.3e-75 284.3 196 67.9
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 7.3e-75 284.3 181 71.8
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 1.2e-74 283.5 191 69.1
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.2e-74 283.5 188 70.7
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 1.6e-74 283.1 190 70.5
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 1.6e-74 283.1 197 66.0
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 2.1e-74 282.7 195 66.2
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 2.1e-74 282.7 191 66.0
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 3.6e-74 282.0 191 68.1
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 8.0e-74 280.8 199 66.8
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 5.2e-73 278.1 188 67.0
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 5.2e-73 278.1 188 67.6
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 5.2e-73 278.1 188 66.5
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 6.8e-73 277.7 202 68.3
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 2.6e-72 275.8 197 65.5
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 9.8e-72 273.9 178 70.2
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 3.7e-71 271.9 198 66.2
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 6.4e-71 271.2 188 66.0
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 1.9e-70 269.6 194 64.9
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.9e-70 269.6 267 53.9
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 2.4e-70 269.2 193 64.2
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 9.2e-70 267.3 188 64.4
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 1.6e-69 266.5 188 64.4
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 6.0e-69 264.6 188 63.3
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 6.0e-69 264.6 188 63.8
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 1.0e-68 263.8 188 62.8
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 1.7e-68 263.1 188 63.8
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 2.3e-68 262.7 186 64.5
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 3.0e-68 262.3 195 63.1
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 3.9e-68 261.9 144 81.9
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.5e-67 260.0 210 63.8
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 2.1e-66 256.1 179 65.4
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 6.2e-66 254.6 179 65.4
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.2e-64 250.4 190 63.2
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 2.6e-64 249.2 179 64.8
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 2.6e-64 249.2 179 64.8
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 3.7e-63 245.4 158 75.3
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.4e-62 243.4 169 65.7
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 2.4e-62 242.7 205 60.5
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.4e-62 242.7 149 71.8
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 7.1e-62 241.1 192 60.4
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.5e-61 238.8 152 73.7
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.9e-60 235.3 179 62.0
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 6.6e-60 234.6 200 60.0
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 1.2e-58 230.3 195 57.4
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 2.1e-58 229.6 196 58.2
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 2.4e-57 226.1 196 54.1
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 6.8e-57 224.6 149 64.4
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.7e-55 219.9 151 66.2
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 2.9e-55 219.2 134 74.6
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 4.9e-55 218.4 191 56.5
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 5.4e-54 214.9 152 67.8
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 2.7e-53 212.6 178 60.1
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 2.7e-53 212.6 176 58.0
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 6.0e-53 211.5 199 50.8
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 2.3e-52 209.5 152 65.8
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 6.6e-52 208.0 184 54.3
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 1.9e-51 206.5 134 70.9
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 4.3e-51 205.3 195 49.2
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.2e-50 203.8 199 48.7
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 1.2e-50 203.8 181 55.8
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 1.1e-49 200.7 197 47.2
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.8e-49 199.9 183 56.8
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 2.0e-48 196.4 128 71.9
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 1.7e-47 193.4 198 46.5
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.1e-46 190.7 182 46.7
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.9e-46 189.9 104 75.0
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.3e-42 177.2 191 47.6
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 1.1e-41 174.1 149 57.0
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 2.4e-41 172.9 191 47.6
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 1.5e-40 170.2 130 60.8
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 7.6e-40 167.9 190 45.3
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 5.6e-35 151.8 184 44.0
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 9.6e-35 151.0 190 42.6
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 9.6e-35 151.0 190 42.6
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 4.2e-30 135.6 87 65.5
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 5.5e-30 135.2 186 41.9
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.1e-28 128.6 90 61.1
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.1e-17 94.4 74 59.5
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 4.5e-16 89.0 150 38.7
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 3.8e-15 85.9 169 29.6
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 5.0e-15 85.5 169 29.6
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 8.5e-15 84.7 163 30.7
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 1.1e-14 84.3 169 29.0
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 1.9e-14 83.6 162 30.2
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 2.5e-14 83.2 153 30.7
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 3.2e-14 82.8 153 30.1
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 5.5e-14 82.0 162 30.2
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 1.2e-13 80.9 163 31.3
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 2.7e-13 79.7 168 31.0
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 7.9e-13 78.2 169 29.6
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.5e-11 73.9 56 50.0
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 3.3e-11 72.8 153 28.8
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 4.3e-11 72.4 167 30.5
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 2.8e-10 69.7 161 28.0
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 3.7e-10 69.3 161 26.1
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 4.8e-10 68.9 39 74.4
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 3.4e-08 62.8 50 64.0
MBI15_g39225_MAGBIO Magnolia biondii HOM05D022081 ORTHO05D005351 5.0e-07 58.9 43 53.5
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 8.5e-07 58.2 96 34.4


User provided reference genes

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