Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 1.1e-242 842.8 410 100.0
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.2e-181 638.3 403 72.7
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.1e-178 630.2 401 74.8
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.6e-177 626.3 393 74.6
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 2.8e-177 625.5 404 71.3
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.6e-177 625.2 403 71.5
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 6.2e-177 624.4 405 71.1
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 8.1e-177 624.0 403 72.5
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.4e-176 623.2 393 74.0
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.4e-176 622.5 403 73.2
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.4e-176 622.5 403 73.2
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 3.1e-176 622.1 403 72.0
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 9.0e-176 620.5 403 71.0
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.4e-175 618.6 403 71.2
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 9.9e-175 617.1 393 74.0
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 3.2e-173 612.1 404 70.5
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 9.3e-173 610.5 394 73.6
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.6e-172 608.2 394 73.6
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 4.6e-172 608.2 400 72.5
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 6.0e-172 607.8 394 73.4
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 7.8e-172 607.4 397 71.0
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 5.1e-171 604.7 403 70.7
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.1e-170 603.6 394 72.8
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 4.3e-170 601.7 397 69.0
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 4.3e-170 601.7 397 70.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 2.4e-168 595.9 401 69.8
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 4.0e-168 595.1 401 69.8
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 4.0e-168 595.1 401 69.8
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 5.3e-168 594.7 401 69.8
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 5.3e-168 594.7 401 69.8
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 5.3e-168 594.7 401 69.8
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 6.9e-168 594.3 394 70.3
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.5e-167 593.2 401 69.3
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.6e-167 592.4 399 68.9
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.6e-167 592.4 395 70.9
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 5.8e-167 591.3 403 68.5
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 7.6e-167 590.9 406 68.2
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.7e-166 589.7 399 69.4
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.2e-166 589.3 402 68.9
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.2e-166 589.3 399 69.2
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.1e-165 587.0 399 68.9
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 2.4e-165 585.9 392 69.9
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.4e-165 585.9 402 68.7
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 4.2e-165 585.1 401 68.6
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 9.3e-165 583.9 401 68.1
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 9.3e-165 583.9 406 67.2
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.1e-164 582.8 397 68.0
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 3.5e-164 582.0 406 66.7
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 3.5e-164 582.0 404 67.8
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.0e-163 580.5 396 69.2
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.0e-163 580.5 410 68.0
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.3e-163 580.1 407 68.8
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.3e-163 580.1 402 68.9
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 8.7e-163 577.4 401 65.8
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.5e-162 575.9 408 67.2
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 7.4e-162 574.3 395 65.8
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.1e-161 572.8 407 65.8
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 3.7e-161 572.0 405 66.2
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 8.1e-161 570.9 397 65.2
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.4e-160 570.1 404 66.3
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 2.4e-160 569.3 393 69.2
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 2.4e-160 569.3 405 67.7
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 2.4e-160 569.3 407 66.8
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 2.6e-159 565.8 401 65.3
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.2e-158 562.8 384 68.8
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.8e-158 562.0 402 65.2
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.9e-157 559.7 399 64.2
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 4.2e-157 558.5 402 64.9
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 9.3e-157 557.4 404 64.6
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 3.5e-156 555.4 398 64.8
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 3.5e-156 555.4 391 67.8
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 6.0e-156 554.7 390 66.9
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 1.0e-155 553.9 400 64.5
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 8.7e-155 550.8 387 66.1
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.1e-154 550.4 398 64.1
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.9e-154 549.7 414 63.5
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.5e-154 549.3 406 64.0
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 4.3e-154 548.5 399 65.7
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 4.3e-154 548.5 399 63.7
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 7.4e-154 547.7 386 65.8
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 4.8e-153 545.0 392 64.3
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 8.2e-153 544.3 390 64.6
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.4e-152 543.5 398 62.3
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.8e-152 543.1 401 62.1
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.4e-152 542.7 386 65.5
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.3e-152 541.6 387 65.1
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 9.0e-152 540.8 392 63.8
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 9.0e-152 540.8 386 67.4
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 9.0e-152 540.8 386 67.4
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.2e-151 540.4 388 65.2
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 3.4e-151 538.9 397 62.0
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 4.5e-151 538.5 387 65.1
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 4.5e-151 538.5 400 65.0
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 7.6e-151 537.7 403 62.0
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 5.0e-150 535.0 403 62.5
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 8.4e-150 534.3 386 64.5
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 5.5e-149 531.6 397 62.2
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 9.3e-149 530.8 389 65.6
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.1e-148 529.6 396 65.7
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 7.9e-148 527.7 399 62.9
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.3e-147 526.9 388 64.2
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.0e-147 525.8 397 61.5
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 3.9e-147 525.4 413 62.0
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.1e-146 523.9 386 62.2
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.3e-146 522.3 386 61.9
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.4e-146 521.2 371 67.1
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.4e-146 521.2 371 67.1
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 9.7e-146 520.8 403 62.0
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 2.2e-145 519.6 419 60.1
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.2e-143 513.8 386 63.5
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.7e-142 510.0 417 58.5
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.7e-142 510.0 396 61.6
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 6.5e-142 508.1 398 60.1
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 8.5e-142 507.7 414 59.4
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 6.7e-139 498.0 384 60.9
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 4.8e-137 491.9 387 60.2
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.9e-133 479.9 413 57.9
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-131 473.8 384 59.4
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 3.3e-130 469.2 410 53.9
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 3.5e-127 459.1 384 57.0
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.9e-126 456.1 412 53.4
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 6.7e-123 444.9 406 52.5
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.3e-121 438.3 402 53.2
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.1e-120 436.0 400 53.2
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 8.0e-116 421.4 398 54.3
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.9e-111 405.2 374 53.5
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 2.2e-110 403.3 406 48.3
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.9e-110 402.9 399 52.1
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 9.4e-109 397.9 418 46.9
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 4.9e-105 385.6 402 49.8
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 6.1e-100 368.6 398 47.7
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 2.3e-99 366.7 406 48.8
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.9e-99 364.8 403 50.9
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 2.0e-95 353.6 403 42.2
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 7.5e-90 335.1 400 46.5
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.9e-89 332.4 403 45.2
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 6.6e-86 322.0 256 60.9
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 9.5e-85 318.2 397 45.3
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.9e-80 303.9 397 43.3
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 1.6e-79 300.8 394 42.1
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 7.6e-74 282.0 398 42.2
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.4e-72 277.7 228 59.2
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-64 251.1 186 60.8
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 5.6e-61 239.2 156 66.7
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.3e-60 238.0 426 33.1
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 1.1e-40 171.8 155 52.3
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 9.6e-37 158.7 384 28.9
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.6e-34 150.6 119 58.8
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.6e-31 141.4 318 28.6
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 6.1e-31 139.4 135 54.8
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 2.0e-26 124.4 82 68.3
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 4.2e-16 90.1 406 25.9
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 4.1e-11 73.6 40 80.0
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 3.5e-10 70.5 45 66.7
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 6.1e-07 59.7 402 22.9
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 2.3e-06 57.8 60 46.7
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 2.3e-06 57.8 72 50.0


User provided reference genes

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