Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0689 Cannabis sativa HOM05D002920 ORTHO05D003118 2.3e-131 472.2 240 100.0
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 5.0e-102 374.8 219 88.1
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 1.5e-101 373.2 220 85.9
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 5.5e-101 371.3 220 85.9
QL09p018203 Quercus lobata HOM05D002920 ORTHO05D003118 2.0e-98 362.8 219 84.0
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 1.8e-96 356.3 220 82.7
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 2.4e-96 355.9 219 82.6
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 2.4e-96 355.9 218 82.6
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 4.1e-96 355.1 219 82.6
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 4.1e-96 355.1 220 80.5
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 1.6e-95 353.2 219 82.2
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 3.5e-95 352.1 219 81.7
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 3.5e-95 352.1 219 83.1
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 4.5e-95 351.7 220 80.9
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 7.8e-95 350.9 219 81.3
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 1.0e-94 350.5 220 80.5
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 1.3e-94 350.1 220 79.5
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 2.9e-94 349.0 219 81.7
FAN13G0555 Fragaria x ananassa HOM05D002920 ORTHO05D003118 3.8e-94 348.6 218 80.7
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 5.0e-94 348.2 218 81.7
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 8.6e-94 347.4 218 82.1
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 1.1e-93 347.1 219 80.4
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 1.5e-93 346.7 221 81.4
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 2.5e-93 345.9 219 80.4
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 3.3e-93 345.5 218 79.8
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 3.3e-93 345.5 218 80.3
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 3.3e-93 345.5 218 79.8
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 3.3e-93 345.5 219 80.4
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 7.3e-93 344.4 218 79.8
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 7.3e-93 344.4 222 80.2
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 7.3e-93 344.4 219 80.4
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 9.5e-93 344.0 217 79.7
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 2.1e-92 342.8 219 79.0
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 6.1e-92 341.3 219 79.0
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 1.0e-91 340.5 220 78.2
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 1.4e-91 340.1 219 78.5
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 3.0e-91 339.0 220 80.0
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 6.8e-91 337.8 219 79.5
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 2.6e-90 335.9 221 76.9
Atru.chr13.989 Acer truncatum HOM05D002920 ORTHO05D003118 1.3e-89 333.6 220 78.6
CSS0008058 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 2.9e-89 332.4 221 76.0
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 2.9e-89 332.4 222 78.8
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 2.9e-89 332.4 220 76.8
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 3.7e-89 332.0 220 76.8
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 8.3e-89 330.9 219 76.7
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 8.3e-89 330.9 220 77.7
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 1.1e-88 330.5 219 78.5
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 1.8e-88 329.7 219 78.5
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 1.8e-88 329.7 220 76.4
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 2.4e-88 329.3 219 78.5
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 2.4e-88 329.3 219 78.1
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 3.2e-88 328.9 222 77.9
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 3.2e-88 328.9 221 76.9
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 4.1e-88 328.6 219 78.1
MD08G1201600 Malus domestica HOM05D002920 ORTHO05D003118 1.6e-87 326.6 231 74.9
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 2.0e-87 326.2 219 77.6
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 3.5e-87 325.5 225 76.9
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 4.6e-87 325.1 220 75.5
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 7.8e-87 324.3 223 77.1
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 7.8e-87 324.3 216 77.8
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 2.3e-86 322.8 219 78.1
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 5.0e-86 321.6 219 77.2
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 8.6e-86 320.9 220 75.5
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 1.1e-85 320.5 220 75.5
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 4.3e-85 318.5 214 78.0
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 3.6e-84 315.5 219 74.9
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 8.0e-84 314.3 222 75.2
MD08G1208300 Malus domestica HOM05D002920 ORTHO05D003118 8.0e-84 314.3 227 74.0
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 1.4e-83 313.5 220 71.4
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 1.4e-83 313.5 222 76.1
Oeu038176.1 Olea europaea HOM05D002920 ORTHO05D003118 2.3e-83 312.8 219 75.3
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 1.2e-82 310.5 224 71.4
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 3.7e-81 305.4 221 75.1
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 3.7e-81 305.4 221 75.1
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 3.7e-81 305.4 221 75.1
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 6.4e-81 304.7 219 74.0
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 6.4e-81 304.7 220 71.4
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 1.1e-80 303.9 221 74.7
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 1.9e-80 303.1 222 75.2
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 2.4e-80 302.8 220 70.9
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 1.6e-79 300.1 208 71.6
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 1.0e-78 297.4 219 71.7
Solyc04g076540.4 Solanum lycopersicum HOM05D002920 ORTHO05D003118 3.0e-78 295.8 220 69.5
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 5.0e-78 295.0 219 72.1
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 5.0e-78 295.0 219 72.1
C01p35900 Brassica napus HOM05D002920 ORTHO05D003118 5.0e-78 295.0 219 72.1
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 5.0e-78 295.0 219 72.1
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 8.6e-78 294.3 221 72.4
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 8.6e-78 294.3 220 70.0
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 1.5e-77 293.5 219 71.7
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 1.9e-77 293.1 219 71.7
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 2.5e-77 292.7 218 70.2
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 4.3e-77 292.0 217 71.9
Ca_05459_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 1.6e-76 290.0 225 65.3
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 2.8e-76 289.3 222 69.8
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 3.6e-76 288.9 222 70.7
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 4.7e-76 288.5 220 67.7
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 8.1e-76 287.7 220 68.2
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 1.1e-75 287.3 219 69.9
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.1e-75 287.3 215 71.2
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 4.0e-75 285.4 215 70.2
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 4.0e-75 285.4 220 67.3
SEGI_15502 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 4.4e-74 282.0 222 68.0
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 5.8e-74 281.6 218 69.3
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 7.5e-74 281.2 217 68.2
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 2.2e-73 279.6 222 64.4
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 1.4e-72 276.9 214 65.4
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 4.1e-72 275.4 220 65.9
CARHR053650 Cardamine hirsuta HOM05D002920 ORTHO05D003118 9.2e-72 274.2 220 67.7
Psat2g064120 Pisum sativum HOM05D002920 ORTHO05D003118 2.7e-71 272.7 217 64.5
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 3.0e-70 269.2 222 67.1
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 3.9e-70 268.9 221 64.3
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 1.5e-69 266.9 215 66.0
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 7.3e-69 264.6 215 67.4
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 7.3e-69 264.6 215 67.4
PGSC0003DMG400002051 Solanum tuberosum HOM05D002920 ORTHO05D003118 9.5e-69 264.2 216 67.1
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 1.6e-68 263.5 216 64.4
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 2.1e-68 263.1 215 64.2
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 2.1e-68 263.1 215 64.2
vmacro21352 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 6.2e-68 261.5 221 62.0
Gohir.A05G264400 Gossypium hirsutum HOM05D002920 ORTHO05D003118 8.1e-68 261.2 215 64.7
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 8.1e-68 261.2 220 65.9
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 1.4e-67 260.4 219 63.0
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 1.4e-67 260.4 182 68.1
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 6.8e-67 258.1 218 62.8
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 8.9e-67 257.7 219 62.6
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 8.9e-67 257.7 221 62.0
CDE07G0298 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 1.2e-66 257.3 224 65.2
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 2.0e-66 256.5 218 62.4
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 3.4e-66 255.8 241 60.2
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 1.3e-65 253.8 219 63.0
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 1.3e-65 253.8 232 59.5
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 1.4e-64 250.4 219 62.6
Haze_22479 Corylus avellana HOM05D002920 ORTHO05D003118 2.4e-64 249.6 145 84.8
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 7.1e-64 248.1 219 60.3
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 9.2e-64 247.7 218 61.0
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 9.2e-64 247.7 218 61.0
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 1.2e-63 247.3 218 61.0
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 1.2e-63 247.3 218 61.0
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 1.0e-62 244.2 237 58.2
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 3.9e-62 242.3 238 57.1
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 5.1e-62 241.9 212 60.8
Lsat_1_v5_gn_7_70960 Lactuca sativa HOM05D002920 ORTHO05D003118 4.3e-61 238.8 225 60.4
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 1.6e-60 236.9 217 59.9
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 2.8e-60 236.1 231 57.1
Lsat_1_v5_gn_9_80681 Lactuca sativa HOM05D002920 ORTHO05D003118 4.4e-58 228.8 182 64.8
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 7.6e-58 228.0 219 58.9
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 8.4e-57 224.6 222 58.1
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 4.2e-56 222.2 217 55.3
Sp1g33860 Schrenkiella parvula HOM05D002920 ORTHO05D003118 1.7e-54 216.9 222 59.5
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 2.5e-53 213.0 276 46.4
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 2.4e-51 206.5 189 58.2
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 6.9e-51 204.9 227 54.6
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 3.4e-50 202.6 226 54.0
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 8.7e-46 188.0 167 60.5
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 2.6e-42 176.4 229 48.5
Cpa.g.sc21.36 Carica papaya HOM05D002920 ORTHO05D003118 1.4e-40 170.6 107 82.2
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 1.0e-38 164.5 212 52.4
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 1.0e-38 164.5 219 47.0
Os03g0353701 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 2.8e-36 156.4 153 56.2
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 2.8e-36 156.4 173 56.1
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 4.8e-36 155.6 222 48.6
PSO094G0001 Papaver somniferum HOM05D002920 ORTHO05D003118 4.2e-32 142.5 84 81.0
Hund17271 Selenicereus undatus HOM05D002920 ORTHO05D003118 5.0e-25 119.0 151 49.7
C08p07060 Brassica napus HOM05D002920 ORTHO05D003118 1.4e-24 117.5 148 50.7
BolC8t47550H Brassica oleracea HOM05D002920 ORTHO05D003118 1.4e-24 117.5 148 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 4.8e-20 102.4 147 43.5
CAN.G375.38 Capsicum annuum HOM05D002920 ORTHO05D003118 3.1e-19 99.8 104 52.9
vmacro04641 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 9.1e-19 98.2 56 82.1
Hund17270 Selenicereus undatus HOM05D002920 ORTHO05D003118 7.7e-18 95.1 56 80.4
CSS0043684 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 6.7e-14 82.0 41 87.8
Os03g0681300 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 2.4e-11 73.6 66 65.2


User provided reference genes

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