Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 5.5e-31 137.1 75 100.0
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 3.8e-16 87.8 75 66.7
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 8.5e-16 86.7 69 69.6
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.5e-15 85.9 62 74.2
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 1.9e-15 85.5 74 64.9
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 2.5e-15 85.1 66 68.2
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 4.2e-15 84.3 65 69.2
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 4.2e-15 84.3 65 69.2
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 5.5e-15 84.0 54 77.8
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 1.2e-14 82.8 68 67.6
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.6e-14 82.4 66 66.7
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 3.6e-14 81.3 71 63.4
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 8.0e-14 80.1 66 68.2
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 4.0e-13 77.8 66 63.6
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 4.0e-13 77.8 71 59.2
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 1.2e-12 76.3 51 74.5
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.2e-12 76.3 70 62.9
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.2e-12 76.3 73 58.9
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.2e-12 76.3 79 59.5
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 1.5e-12 75.9 74 55.4
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 2.0e-12 75.5 75 58.7
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.0e-12 75.5 73 58.9
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.0e-12 75.5 62 67.7
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 2.6e-12 75.1 44 84.1
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 2.6e-12 75.1 50 72.0
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 4.4e-12 74.3 58 65.5
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 4.4e-12 74.3 50 72.0
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 7.5e-12 73.6 67 61.2
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 7.5e-12 73.6 50 70.0
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 7.5e-12 73.6 69 59.4
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 9.7e-12 73.2 50 70.0
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.7e-11 72.4 67 59.7
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.8e-11 71.6 67 59.7
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 3.7e-11 71.2 43 76.7
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 3.7e-11 71.2 69 55.1
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 4.8e-11 70.9 66 56.1
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 8.3e-11 70.1 50 66.0
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 8.3e-11 70.1 50 66.0
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 8.3e-11 70.1 50 66.0
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 8.3e-11 70.1 43 79.1
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 8.3e-11 70.1 65 55.4
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.1e-10 69.7 67 56.7
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 1.1e-10 69.7 65 56.9
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 1.4e-10 69.3 58 65.5
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 1.8e-10 68.9 50 64.0
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 1.8e-10 68.9 69 56.5
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.8e-10 68.9 51 64.7
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.4e-10 68.6 70 55.7
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 3.1e-10 68.2 50 62.0
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 3.1e-10 68.2 50 64.0
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 3.1e-10 68.2 50 64.0
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 3.1e-10 68.2 49 67.3
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 4.1e-10 67.8 71 56.3
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 4.1e-10 67.8 50 64.0
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 4.1e-10 67.8 68 52.9
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 5.3e-10 67.4 60 60.0
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 5.3e-10 67.4 50 66.0
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 7.0e-10 67.0 50 62.0
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 7.0e-10 67.0 74 55.4
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 9.1e-10 66.6 45 73.3
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 1.2e-09 66.2 66 53.0
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 2.0e-09 65.5 47 70.2
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 2.0e-09 65.5 48 68.8
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 2.0e-09 65.5 66 54.5
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 3.5e-09 64.7 50 58.0
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.5e-09 64.7 50 62.0
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 4.5e-09 64.3 54 61.1
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 4.5e-09 64.3 73 53.4
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 5.9e-09 63.9 66 54.5
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 7.7e-09 63.5 66 51.5
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 7.7e-09 63.5 59 61.0
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.3e-08 62.8 73 50.7
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 2.2e-08 62.0 70 50.0
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 2.9e-08 61.6 61 55.7
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 3.8e-08 61.2 65 56.9
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 3.8e-08 61.2 67 49.3
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 5.0e-08 60.8 72 52.8
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 5.0e-08 60.8 37 75.7
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 6.5e-08 60.5 72 52.8
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 8.5e-08 60.1 43 65.1
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.1e-07 59.7 50 60.0
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 1.5e-07 59.3 48 60.4
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 1.9e-07 58.9 44 65.9
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 1.9e-07 58.9 45 62.2
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 2.1e-06 55.5 67 44.8
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 2.7e-06 55.1 45 60.0
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 4.7e-06 54.3 38 68.4
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 6.1e-06 53.9 66 47.0


User provided reference genes

Program Settings