Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 1.8e-84 315.8 154 100.0
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 3.5e-80 301.6 152 96.7
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 4.5e-80 301.2 153 94.8
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 5.9e-80 300.8 152 96.1
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 5.9e-80 300.8 152 96.1
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 1.0e-79 300.1 152 95.4
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 1.0e-79 300.1 152 95.4
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 1.3e-79 299.7 152 95.4
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 1.3e-79 299.7 152 95.4
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-79 299.7 152 94.7
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-79 299.7 152 94.7
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-79 299.7 152 94.7
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-79 299.7 152 94.7
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 1.3e-79 299.7 152 94.7
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.9e-79 298.5 152 94.1
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 2.9e-79 298.5 152 94.7
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 3.8e-79 298.1 152 94.7
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 3.8e-79 298.1 152 94.7
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 3.8e-79 298.1 152 95.4
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 3.8e-79 298.1 152 95.4
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 6.5e-79 297.4 152 94.7
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 1.5e-78 296.2 154 92.9
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.9e-78 295.8 152 94.1
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 3.2e-78 295.0 153 94.1
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 3.2e-78 295.0 154 91.6
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 94.7
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 148 95.3
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 4.2e-78 294.7 148 95.3
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 92.8
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 92.8
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 92.8
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 7.2e-78 293.9 152 92.1
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 9.4e-78 293.5 154 90.9
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 9.4e-78 293.5 152 92.8
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 9.4e-78 293.5 152 92.1
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 1.6e-77 292.7 152 90.8
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 152 92.1
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.1e-77 292.4 152 92.1
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.1e-77 292.4 152 92.1
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.7e-77 292.0 154 90.3
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 93.4
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 93.4
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 3.6e-77 291.6 152 92.8
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 3.6e-77 291.6 150 92.0
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.6e-77 291.6 152 90.8
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 4.7e-77 291.2 152 92.8
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 4.7e-77 291.2 152 91.4
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 6.1e-77 290.8 152 90.8
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 6.1e-77 290.8 151 92.7
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 8.0e-77 290.4 152 91.4
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 8.0e-77 290.4 152 92.8
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 8.0e-77 290.4 152 92.8
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.4e-76 289.7 152 92.8
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 1.4e-76 289.7 152 90.1
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.8e-76 289.3 151 91.4
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.3e-76 288.9 149 91.3
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 91.4
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 3.0e-76 288.5 148 93.2
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.0e-76 288.1 152 90.1
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 4.0e-76 288.1 147 92.5
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 4.0e-76 288.1 147 92.5
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.2e-76 287.7 152 90.1
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.2e-76 287.7 152 90.1
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 6.8e-76 287.3 154 90.9
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.8e-76 287.3 152 90.1
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.8e-76 287.3 151 91.4
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.8e-76 287.3 151 91.4
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 8.8e-76 287.0 152 90.8
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 8.8e-76 287.0 147 92.5
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 8.8e-76 287.0 151 91.4
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 8.8e-76 287.0 152 91.4
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 1.2e-75 286.6 152 89.5
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.5e-75 286.2 152 90.1
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.0e-75 285.8 152 90.8
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.0e-75 285.8 151 90.1
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 2.6e-75 285.4 149 90.6
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 2.6e-75 285.4 151 91.4
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 2.6e-75 285.4 151 91.4
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 3.4e-75 285.0 151 90.1
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 3.4e-75 285.0 157 87.9
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 4.4e-75 284.6 147 91.8
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 4.4e-75 284.6 154 89.0
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 5.7e-75 284.3 149 91.9
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 5.7e-75 284.3 155 88.4
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.3e-74 283.1 154 88.3
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.3e-74 283.1 154 88.3
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 1.7e-74 282.7 148 91.2
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.2e-74 282.3 152 90.1
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 2.8e-74 282.0 154 89.6
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.8e-74 282.0 148 91.2
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 3.7e-74 281.6 152 88.2
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 91.2
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 6.3e-74 280.8 152 89.5
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 6.3e-74 280.8 144 91.7
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 1.4e-73 279.6 148 89.9
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 2.4e-73 278.9 148 90.5
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.4e-73 278.9 152 88.8
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 3.1e-73 278.5 152 88.2
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 4.1e-73 278.1 148 89.2
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 4.1e-73 278.1 148 89.2
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 4.1e-73 278.1 148 89.2
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 4.1e-73 278.1 148 89.2
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 5.4e-73 277.7 150 89.3
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 7.0e-73 277.3 152 86.8
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 9.1e-73 276.9 148 89.2
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.0e-72 275.8 144 91.7
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 2.7e-72 275.4 148 88.5
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 2.7e-72 275.4 148 88.5
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.9e-71 271.9 143 90.2
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 4.2e-70 268.1 156 84.0
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 7.2e-70 267.3 140 91.4
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.2e-69 266.5 148 86.5
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 2.1e-69 265.8 143 89.5
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.0e-68 263.5 146 87.0
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 2.0e-67 259.2 140 88.6
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 9.8e-67 256.9 132 90.9
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 2.8e-66 255.4 131 93.1
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 2.8e-66 255.4 131 93.1
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.1e-65 253.4 132 92.4
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.4e-65 253.1 132 91.7
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.8e-65 252.7 132 91.7
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 1.8e-65 252.7 132 90.2
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 1.8e-65 252.7 130 90.8
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 4.1e-65 251.5 134 89.6
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 7.0e-65 250.8 132 89.4
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 9.1e-65 250.4 133 90.2
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 1.6e-64 249.6 154 79.9
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.0e-64 249.2 129 90.7
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.0e-64 249.2 134 87.3
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.7e-64 248.8 132 87.9
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.5e-64 248.1 147 82.3
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 4.5e-64 248.1 140 85.7
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.9e-64 247.7 132 89.4
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 5.9e-64 247.7 134 88.8
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 7.7e-64 247.3 150 79.3
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.0e-63 246.9 140 85.0
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 1.3e-63 246.5 152 81.6
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.3e-63 246.5 132 87.1
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 2.3e-63 245.7 130 88.5
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 3.8e-63 245.0 127 89.8
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.2e-61 240.0 143 76.2
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 1.6e-61 239.6 144 80.6
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 1.0e-60 236.9 144 75.7
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 1.8e-60 236.1 151 74.2
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 9.2e-57 223.8 157 72.0
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 6.6e-55 217.6 190 62.1
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 3.6e-53 211.8 116 88.8
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.9e-50 202.2 144 71.5
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 3.7e-50 201.8 126 74.6
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 2.0e-48 196.1 103 89.3
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.7e-48 195.7 103 91.3
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 3.0e-47 192.2 103 89.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.5e-46 189.9 116 75.0
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.1e-41 173.7 87 90.8
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 9.2e-41 170.6 115 77.4
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 5.6e-38 161.4 87 83.9
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 9.5e-38 160.6 83 90.4
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 6.2e-37 157.9 81 95.1
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 3.7e-34 148.7 74 93.2
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 4.9e-34 148.3 147 57.1
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 4.1e-33 145.2 73 97.3
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.8e-27 124.8 71 84.5
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.2e-26 122.9 71 84.5
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 8.4e-26 120.9 83 71.1
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.1e-25 120.6 71 83.1
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 6.0e-16 88.2 45 95.6
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.5e-14 83.6 46 87.0
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.8e-12 76.6 70 58.6


User provided reference genes

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