Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0166 Cannabis sativa HOM05D007546 ORTHO05D009542 9.6e-161 570.1 283 100.0
Atru.chr5.1426 Acer truncatum HOM05D007546 ORTHO05D009542 7.3e-84 314.7 280 58.2
Gohir.D08G076500 Gossypium hirsutum HOM05D007546 ORTHO05D009542 6.1e-83 311.6 276 56.2
Dinv34747 Davidia involucrata HOM05D007546 ORTHO05D009542 1.4e-82 310.5 278 60.1
Gohir.A08G068100 Gossypium hirsutum HOM05D007546 ORTHO05D009542 2.2e-80 303.1 276 55.1
QL12p022024 Quercus lobata HOM05D007546 ORTHO05D009542 1.4e-79 300.4 265 61.1
MD11G1286600 Malus domestica HOM05D007546 ORTHO05D009542 3.2e-79 299.3 260 59.6
CSS0011141 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 9.2e-79 297.7 278 57.9
TWI14G0110 Tripterygium wilfordii HOM05D007546 ORTHO05D009542 1.6e-78 297.0 281 56.9
MELO3C015843.2 Cucumis melo HOM05D007546 ORTHO05D009542 4.6e-78 295.4 280 54.6
CsaV3_7G028190 Cucumis sativus L. HOM05D007546 ORTHO05D009542 3.9e-77 292.4 280 53.2
Duzib138G1282 Durio zibethinus HOM05D007546 ORTHO05D009542 6.6e-77 291.6 283 54.1
Sabra05G0158800 Salix brachista HOM05D007546 ORTHO05D009542 1.9e-76 290.0 281 55.9
Actinidia24887 Actinidia chinensis HOM05D007546 ORTHO05D009542 7.3e-76 288.1 280 54.6
HanXRQChr10g0282741 Helianthus annuus HOM05D007546 ORTHO05D009542 1.4e-74 283.9 282 52.8
Sed0013948 Sechium edule HOM05D007546 ORTHO05D009542 1.8e-74 283.5 279 53.0
Potri.005G208700 Populus trichocarpa HOM05D007546 ORTHO05D009542 5.2e-74 282.0 276 56.2
RcHm_v2.0_Chr6g0291141 Rosa chinensis HOM05D007546 ORTHO05D009542 5.2e-74 282.0 262 55.7
Gorai.004G081100 Gossypium raimondii HOM05D007546 ORTHO05D009542 6.8e-74 281.6 259 54.4
Prupe.8G241900 Prunus persica HOM05D007546 ORTHO05D009542 1.5e-73 280.4 273 59.3
GSVIVG01011126001 Vitis vinifera HOM05D007546 ORTHO05D009542 2.6e-73 279.6 272 54.0
ClCG09G006970 Citrullus lanatus HOM05D007546 ORTHO05D009542 1.7e-72 276.9 306 50.7
THA.LOC104801231 Tarenaya hassleriana HOM05D007546 ORTHO05D009542 3.7e-72 275.8 278 52.9
FvH4_2g23671 Fragaria vesca HOM05D007546 ORTHO05D009542 1.9e-71 273.5 263 54.4
COL.COLO4_09104 Corchorus olitorius HOM05D007546 ORTHO05D009542 4.1e-71 272.3 265 54.7
MSTRG.18229 Avicennia marina HOM05D007546 ORTHO05D009542 1.2e-70 270.8 280 52.9
Eucgr.H01486 Eucalyptus grandis HOM05D007546 ORTHO05D009542 1.6e-70 270.4 265 52.5
Hund05346 Selenicereus undatus HOM05D007546 ORTHO05D009542 1.6e-70 270.4 266 54.1
AL1G12670 Arabidopsis lyrata HOM05D007546 ORTHO05D009542 2.1e-70 270.0 278 51.4
Thecc.01G280300 Theobroma cacao HOM05D007546 ORTHO05D009542 2.1e-70 270.0 250 55.6
Carub.0001s0232 Capsella rubella HOM05D007546 ORTHO05D009542 3.5e-70 269.2 279 52.0
VMungo1383G0744 Vigna mungo HOM05D007546 ORTHO05D009542 4.6e-70 268.9 271 51.7
Peaxi162Scf01622g00012 Petunia axillaris HOM05D007546 ORTHO05D009542 1.0e-69 267.7 279 51.6
Ciclev10023872m.g Citrus clementina HOM05D007546 ORTHO05D009542 3.9e-69 265.8 264 55.7
PGR119G0241 Punica granatum HOM05D007546 ORTHO05D009542 3.9e-69 265.8 257 54.1
Psat3g064520 Pisum sativum HOM05D007546 ORTHO05D009542 1.1e-68 264.2 269 51.7
Hma1.2p1_0257F.1_g103530 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 2.5e-68 263.1 264 53.4
SGA_v2.0_scaffold1G00465 Striga asiatica HOM05D007546 ORTHO05D009542 1.2e-67 260.8 271 52.4
Lj1g0009003 Lotus japonicus HOM05D007546 ORTHO05D009542 2.8e-67 259.6 269 52.8
Nn2g12733 Nelumbo nucifera HOM05D007546 ORTHO05D009542 4.7e-67 258.8 270 50.4
Aqoxy2G03310 Aquilegia oxysepala HOM05D007546 ORTHO05D009542 6.2e-67 258.5 264 50.4
Haze_04718 Corylus avellana HOM05D007546 ORTHO05D009542 1.1e-66 257.7 263 55.9
Lsat_1_v5_gn_9_3860 Lactuca sativa HOM05D007546 ORTHO05D009542 1.1e-66 257.7 271 49.8
Medtr7g094790 Medicago truncatula HOM05D007546 ORTHO05D009542 3.1e-66 256.1 269 50.9
SalBow4G0341 Salvia bowleyana HOM05D007546 ORTHO05D009542 3.1e-66 256.1 283 51.2
DCAR_018417 Daucus carota HOM05D007546 ORTHO05D009542 6.8e-66 255.0 280 47.9
Sp1g02200 Schrenkiella parvula HOM05D007546 ORTHO05D009542 6.8e-66 255.0 277 50.9
Lalb_Chr01g0013761 Lupinus albus HOM05D007546 ORTHO05D009542 8.9e-66 254.6 267 52.4
vmacro14926 Vaccinium macrocarpon HOM05D007546 ORTHO05D009542 8.9e-66 254.6 270 51.9
arahy.Tifrunner.gnm1.ann1.N7I060 Arachis hypogaea HOM05D007546 ORTHO05D009542 4.4e-65 252.3 270 49.3
Cc01_g19550 Coffea canephora HOM05D007546 ORTHO05D009542 7.5e-65 251.5 274 50.0
arahy.Tifrunner.gnm1.ann1.99CH68 Arachis hypogaea HOM05D007546 ORTHO05D009542 9.9e-65 251.1 270 49.3
Thhalv10008478m.g Eutrema salsugineum HOM05D007546 ORTHO05D009542 1.7e-64 250.4 278 49.3
PSO170G1280 Papaver somniferum HOM05D007546 ORTHO05D009542 1.7e-64 250.4 279 47.0
PGSC0003DMG402012883 Solanum tuberosum HOM05D007546 ORTHO05D009542 2.9e-64 249.6 283 50.2
arahy.Tifrunner.gnm1.ann1.P6ZKNU Arachis hypogaea HOM05D007546 ORTHO05D009542 3.7e-64 249.2 270 48.9
Sopen09g026830 Solanum pennellii HOM05D007546 ORTHO05D009542 6.4e-64 248.4 276 50.4
Solyc09g065110.4 Solanum lycopersicum HOM05D007546 ORTHO05D009542 1.4e-63 247.3 274 50.0
EL10Ac7g17228 Beta vulgaris HOM05D007546 ORTHO05D009542 4.1e-63 245.7 271 50.9
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 5.4e-63 245.4 281 48.8
Lj2C1174G3 Lonicera japonica HOM05D007546 ORTHO05D009542 5.4e-63 245.4 262 52.3
Migut.D00289 Erythranthe guttata HOM05D007546 ORTHO05D009542 9.2e-63 244.6 281 48.8
AUR62036823 Chenopodium quinoa HOM05D007546 ORTHO05D009542 6.0e-62 241.9 274 47.1
ECA247G1813 Erigeron canadensis HOM05D007546 ORTHO05D009542 6.0e-62 241.9 278 48.6
Manes.01G208300 Manihot esculenta HOM05D007546 ORTHO05D009542 6.0e-62 241.9 209 61.2
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 1.0e-61 241.1 272 49.3
Ca_08577_v3 Cicer arietinum L. HOM05D007546 ORTHO05D009542 1.5e-60 237.3 254 49.6
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 1.6e-59 233.8 306 45.4
Nitab4.5_0001028g0010 Nicotiana tabacum HOM05D007546 ORTHO05D009542 2.4e-58 229.9 228 52.6
Hma1.2p1_0257F.1_g103520 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 4.0e-58 229.2 218 56.4
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 8.9e-58 228.0 231 52.8
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 1.5e-57 227.3 263 48.3
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 5.8e-57 225.3 231 52.4
Aa31LG1G9350 Aethionema arabicum HOM05D007546 ORTHO05D009542 9.9e-57 224.6 273 46.9
CARHR002520 Cardamine hirsuta HOM05D007546 ORTHO05D009542 9.9e-57 224.6 229 52.0
Cpa.g.sc52.28 Carica papaya HOM05D007546 ORTHO05D009542 3.5e-54 216.1 193 59.1
MBI19_g16657_MAGBIO Magnolia biondii HOM05D007546 ORTHO05D009542 1.0e-53 214.5 271 45.4
Oeu012757.1 Olea europaea HOM05D007546 ORTHO05D009542 1.3e-53 214.2 219 52.1
AUR62038619 Chenopodium quinoa HOM05D007546 ORTHO05D009542 1.7e-53 213.8 281 42.7
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 3.9e-53 212.6 263 47.9
TPR.G6147 Trifolium pratense HOM05D007546 ORTHO05D009542 1.1e-52 211.1 225 51.1
Sc05g0004940 Simmondsia chinensis HOM05D007546 ORTHO05D009542 9.6e-52 208.0 206 53.4
CAN.G242.7 Capsicum annuum HOM05D007546 ORTHO05D009542 9.0e-50 201.4 220 50.9
unitig_61.g26331 Utricularia gibba HOM05D007546 ORTHO05D009542 5.8e-49 198.7 283 42.0
HPP92_010632 Vanilla planifolia HOM05D007546 ORTHO05D009542 8.4e-48 194.9 259 42.1
Ah.15g091950 Amaranthus hybridus HOM05D007546 ORTHO05D009542 1.1e-47 194.5 216 49.5
AT1G03180 Arabidopsis thaliana HOM05D007546 ORTHO05D009542 1.1e-47 194.5 192 51.6
Nitab4.5_0010448g0030 Nicotiana tabacum HOM05D007546 ORTHO05D009542 1.0e-45 188.0 230 47.0
Os05g0251400 Oryza sativa ssp. japonica HOM05D007546 ORTHO05D009542 8.7e-45 184.9 267 38.6
Zm00001eb132020 Zea mays HOM05D007546 ORTHO05D009542 1.1e-44 184.5 268 37.3
Phvul.001G150400 Phaseolus vulgaris HOM05D007546 ORTHO05D009542 2.5e-44 183.3 180 52.8
Glyma.03G153000 Glycine max HOM05D007546 ORTHO05D009542 4.8e-43 179.1 195 48.7
ATR0626G078 Amborella trichopoda HOM05D007546 ORTHO05D009542 1.5e-41 174.1 236 40.7
AUR62043164 Chenopodium quinoa HOM05D007546 ORTHO05D009542 9.3e-39 164.9 171 52.6
Potri.002G053801 Populus trichocarpa HOM05D007546 ORTHO05D009542 1.1e-31 141.4 138 56.5
Glyma.19G155400 Glycine max HOM05D007546 ORTHO05D009542 1.0e-21 108.2 103 52.4
CSS0034697 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 9.4e-15 85.1 85 51.8
Mapoly0002s0121 Marchantia polymorpha HOM05D007546 ORTHO05D009542 3.0e-13 80.1 253 26.9
SalBow4G3151 Salvia bowleyana HOM05D007546 ORTHO05D009542 2.8e-11 73.6 60 58.3
SalBow8G3203 Salvia bowleyana HOM05D007546 ORTHO05D009542 8.2e-11 72.0 60 58.3
SalBow1G5735 Salvia bowleyana HOM05D007546 ORTHO05D009542 5.0e-08 62.8 60 55.0
MCO04G533 Micromonas commoda HOM05D007546 ORTHO05D009542 8.5e-08 62.0 222 26.6
SalBow1G3448 Salvia bowleyana HOM05D007546 ORTHO05D009542 1.6e-06 57.8 48 56.2


User provided reference genes

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