Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 2.0e-220 768.8 403 100.0
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 1.3e-206 723.0 403 94.8
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 1.6e-201 706.1 402 91.5
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 3.9e-200 701.4 403 91.6
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 5.1e-200 701.0 403 90.8
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 2.5e-199 698.7 403 90.6
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 5.7e-199 697.6 403 90.6
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 5.7e-199 697.6 403 90.8
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 1.6e-198 696.0 403 91.3
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 2.8e-198 695.3 403 90.3
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 6.3e-198 694.1 403 89.8
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 6.3e-198 694.1 403 90.8
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 1.1e-197 693.3 403 89.6
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 1.4e-197 693.0 403 89.6
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 1.4e-197 693.0 403 90.6
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 1.8e-197 692.6 403 90.1
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 2.4e-197 692.2 403 89.6
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.4e-197 692.2 403 89.8
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 4.1e-197 691.4 403 89.8
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 6.9e-197 690.6 403 89.6
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 6.9e-197 690.6 403 89.6
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 6.9e-197 690.6 403 89.6
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 9.0e-197 690.3 403 90.6
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 1.2e-196 689.9 403 89.1
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 7.7e-196 687.2 403 89.1
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 1.0e-195 686.8 403 89.1
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 1.0e-195 686.8 403 89.1
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 1.0e-195 686.8 403 89.8
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 1.0e-195 686.8 403 89.1
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 2.2e-195 685.6 403 88.8
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 3.8e-195 684.9 403 89.1
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 3.8e-195 684.9 403 89.3
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.1e-194 683.3 403 88.6
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 1.1e-194 683.3 403 88.6
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 1.4e-194 682.9 403 88.8
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 1.9e-194 682.6 403 88.1
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 7.2e-194 680.6 403 88.6
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 7.2e-194 680.6 403 88.8
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 9.4e-194 680.2 403 88.1
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 9.4e-194 680.2 403 89.1
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 1.6e-193 679.5 403 88.6
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 2.7e-193 678.7 403 88.1
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 2.7e-193 678.7 403 88.1
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 2.7e-193 678.7 403 88.1
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 2.7e-193 678.7 403 88.1
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 3.6e-193 678.3 403 87.8
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 4.6e-193 677.9 403 88.1
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 7.9e-193 677.2 404 88.6
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 7.9e-193 677.2 404 88.6
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 7.9e-193 677.2 403 87.8
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 1.0e-192 676.8 404 87.9
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 1.4e-192 676.4 403 87.3
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 1.8e-192 676.0 403 88.6
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 2.3e-192 675.6 404 88.4
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 3.0e-192 675.2 403 87.1
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 6.7e-192 674.1 403 87.1
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 8.8e-192 673.7 403 87.6
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.6e-191 672.2 403 86.6
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 4.3e-191 671.4 403 87.8
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 4.3e-191 671.4 403 87.3
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 9.7e-191 670.2 404 87.6
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 9.7e-191 670.2 403 86.6
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 3.7e-190 668.3 403 85.4
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 1.1e-189 666.8 403 87.3
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 3.1e-189 665.2 404 86.1
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 5.3e-189 664.5 403 85.6
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 1.2e-188 663.3 403 85.9
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 1.3e-187 659.8 403 86.1
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 5.0e-187 657.9 403 84.6
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 6.5e-187 657.5 403 85.6
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 6.5e-187 657.5 411 84.2
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 4.2e-186 654.8 405 83.5
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 3.6e-185 651.7 506 72.3
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 5.2e-184 647.9 403 85.4
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 3.3e-183 645.2 445 77.1
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 7.4e-183 644.0 407 83.3
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 8.2e-182 640.6 403 84.6
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 1.1e-181 640.2 403 82.4
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 1.1e-181 640.2 403 82.6
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 4.1e-181 638.3 495 72.3
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 4.1e-181 638.3 403 82.4
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 5.3e-181 637.9 403 82.1
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 5.3e-181 637.9 403 83.6
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 9.1e-181 637.1 403 82.6
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 9.1e-181 637.1 403 82.6
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 9.1e-181 637.1 403 82.6
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 2.0e-180 636.0 403 82.6
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 4.5e-180 634.8 403 81.9
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 4.5e-180 634.8 403 82.4
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 4.5e-180 634.8 403 81.9
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 4.5e-180 634.8 403 82.4
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 5.9e-180 634.4 397 83.9
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 7.7e-180 634.0 403 81.9
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 1.0e-179 633.6 442 79.6
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 1.7e-179 632.9 403 81.6
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 1.7e-179 632.9 403 81.6
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 1.7e-179 632.9 403 81.6
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 2.2e-179 632.5 403 81.6
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 2.2e-179 632.5 403 81.6
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 3.2e-178 628.6 423 81.3
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 4.2e-178 628.2 403 82.4
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 5.5e-178 627.9 482 72.2
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 2.3e-176 622.5 403 82.1
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 1.7e-174 616.3 444 77.0
SGA_v2.0_scaffold326G48708 Striga asiatica HOM05D005164 ORTHO05D006398 3.7e-174 615.1 360 89.2
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 1.8e-173 612.8 359 90.5
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 1.8e-173 612.8 373 87.4
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 1.8e-173 612.8 403 81.4
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 1.2e-172 610.1 403 78.7
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 4.5e-172 608.2 403 78.2
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 1.5e-170 603.2 436 76.1
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 6.1e-169 597.8 359 87.2
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 1.8e-168 596.3 403 75.7
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 1.2e-167 593.6 392 82.4
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 1.5e-162 576.6 403 73.9
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 3.6e-161 572.0 402 71.9
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 1.8e-160 569.7 403 72.0
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 1.8e-152 543.1 403 75.4
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 1.1e-149 533.9 403 73.0
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 4.0e-144 515.4 401 67.1
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 7.0e-141 504.6 419 67.5
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 1.7e-139 500.0 352 75.9
CSS0020238 Camellia sinensis var. sinensis HOM05D005164 ORTHO05D006398 1.3e-134 483.8 276 91.3
CAN.G416.53 Capsicum annuum HOM05D005164 ORTHO05D006398 1.7e-123 446.8 317 76.0
RcHm_v2.0_Chr2g0166611 Rosa chinensis HOM05D005164 ORTHO05D006398 4.2e-109 399.1 231 90.5
Cre11.g478240 Chlamydomonas reinhardtii HOM05D005164 ORTHO05D006398 2.7e-108 396.4 399 52.9
MCO16G668 Micromonas commoda HOM05D005164 ORTHO05D006398 1.3e-102 377.5 410 49.8
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 1.0e-99 367.9 216 89.8
PRCOL_00006114 Prasinoderma coloniale HOM05D005164 ORTHO05D006398 1.1e-88 331.3 406 47.5
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 3.6e-84 316.2 214 75.7
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 1.7e-81 307.4 214 76.2
GSVIVG01023193001 Vitis vinifera HOM05D005164 ORTHO05D006398 6.7e-67 258.8 150 90.0
GSVIVG01003780001 Vitis vinifera HOM05D005164 ORTHO05D006398 1.1e-64 251.5 150 87.3
Cfa024373 Carpinus fangiana HOM05D005164 ORTHO05D006398 3.1e-56 223.4 324 41.4
MBI17_g35116_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 1.3e-54 218.0 188 67.0
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 5.4e-48 196.1 146 69.9
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 7.5e-42 175.6 243 50.2
Haze_26904 Corylus avellana HOM05D005164 ORTHO05D006398 1.3e-38 164.9 210 43.3
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 9.5e-37 158.7 95 87.4
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 9.5e-37 158.7 95 87.4
TPR.G136 Trifolium pratense HOM05D005164 ORTHO05D006398 3.2e-16 90.5 49 81.6
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 1.2e-15 88.6 66 74.2
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 9.9e-10 68.9 42 81.0


User provided reference genes

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