Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 3.2e-107 391.7 196 100.0
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 3.3e-35 152.5 94 79.8
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 9.6e-35 151.0 101 75.2
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 1.3e-34 150.6 97 79.4
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 1.6e-34 150.2 97 77.3
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 2.1e-34 149.8 94 78.7
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 2.8e-34 149.4 94 78.7
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 3.7e-34 149.1 97 75.3
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.8e-33 146.7 94 77.7
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 2.4e-33 146.4 101 73.3
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 2.4e-33 146.4 100 77.0
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 3.1e-33 146.0 93 77.4
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 9.0e-33 144.4 100 77.0
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 9.0e-33 144.4 100 77.0
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 9.0e-33 144.4 100 77.0
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.5e-32 143.7 101 70.3
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 2.6e-32 142.9 94 77.7
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 5.8e-32 141.7 99 71.7
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 3.8e-31 139.0 99 73.7
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 8.4e-31 137.9 94 74.5
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 8.4e-31 137.9 94 74.5
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 8.4e-31 137.9 94 74.5
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.1e-30 137.5 94 74.5
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.1e-30 137.5 94 74.5
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 1.4e-30 137.1 97 72.2
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 3.2e-30 136.0 94 73.4
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 5.5e-30 135.2 94 70.2
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 7.1e-30 134.8 94 72.3
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 7.1e-30 134.8 108 66.7
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 7.1e-30 134.8 94 74.5
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 9.3e-30 134.4 101 69.3
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 9.3e-30 134.4 101 69.3
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 9.3e-30 134.4 94 70.2
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 9.3e-30 134.4 102 69.6
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.2e-29 134.0 101 69.3
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 1.6e-29 133.7 94 73.4
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 1.6e-29 133.7 94 71.3
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 1.6e-29 133.7 133 54.9
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 2.1e-29 133.3 95 71.6
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 3.5e-29 132.5 94 71.3
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 3.5e-29 132.5 94 71.3
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 4.6e-29 132.1 94 67.0
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 7.9e-29 131.3 108 67.6
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 7.9e-29 131.3 94 70.2
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 1.0e-28 131.0 102 67.6
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 1.0e-28 131.0 102 69.6
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 2.3e-28 129.8 94 72.3
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 3.0e-28 129.4 94 73.4
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 3.9e-28 129.0 101 63.4
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 6.7e-28 128.3 94 70.2
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 8.7e-28 127.9 99 68.7
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.5e-27 127.1 94 71.3
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.5e-27 127.1 94 71.3
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.5e-27 127.1 94 71.3
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.5e-27 127.1 94 71.3
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.5e-27 127.1 94 71.3
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 1.9e-27 126.7 89 74.2
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 2.5e-27 126.3 94 69.1
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 2.5e-27 126.3 94 69.1
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 4.3e-27 125.6 99 67.7
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 5.6e-27 125.2 94 71.3
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 1.3e-26 124.0 101 65.3
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 1.3e-26 124.0 94 67.0
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 1.3e-26 124.0 94 67.0
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 2.1e-26 123.2 99 66.7
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 2.1e-26 123.2 101 65.3
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 2.8e-26 122.9 98 68.4
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 1.1e-25 120.9 95 68.4
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 1.4e-25 120.6 99 65.7
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 1.4e-25 120.6 99 65.7
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 2.4e-25 119.8 93 65.6
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 3.1e-25 119.4 151 47.7
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 1.2e-24 117.5 99 64.6
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.2e-24 117.5 96 63.5
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.2e-24 117.5 96 61.5
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.2e-24 117.5 101 62.4
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 1.5e-24 117.1 84 73.8
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 2.0e-24 116.7 103 60.2
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 4.5e-24 115.5 92 65.2
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.2e-23 113.2 71 80.3
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 6.5e-23 111.7 97 60.8
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 1.2e-21 107.5 70 74.3
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 6.0e-21 105.1 97 60.8
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 1.3e-20 104.0 84 64.3
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 1.8e-20 103.6 165 41.8
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 3.0e-20 102.8 92 60.9
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 8.7e-20 101.3 86 61.6
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 5.7e-19 98.6 90 58.9
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 7.4e-19 98.2 65 73.8
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 2.8e-18 96.3 71 76.1
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 6.3e-18 95.1 101 56.4
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 1.1e-17 94.4 98 54.1
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.1e-17 94.4 71 66.2
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 2.4e-17 93.2 65 72.3
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 1.2e-16 90.9 68 70.6
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 4.5e-16 89.0 105 52.4
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.2e-15 86.7 69 65.2
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.2e-13 80.9 54 72.2
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 2.1e-13 80.1 49 77.6
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 2.7e-13 79.7 70 58.6
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 4.6e-13 79.0 49 71.4
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 3.3e-11 72.8 68 54.4
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 2.9e-07 59.7 34 73.5
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 2.5e-06 56.6 54 61.1
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 9.4e-06 54.7 46 65.2
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 9.4e-06 54.7 63 54.0


User provided reference genes

Program Settings