Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.3e-94 349.7 177 100.0
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 6.0e-68 261.2 184 76.6
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 2.3e-67 259.2 177 77.4
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 6.6e-67 257.7 179 77.1
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.5e-66 256.5 179 78.2
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 9.5e-66 253.8 174 77.6
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 1.2e-65 253.4 174 78.2
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.6e-65 253.1 177 76.8
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.6e-65 253.1 177 76.8
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 3.6e-65 251.9 178 77.0
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.6e-65 251.9 178 77.0
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 4.7e-65 251.5 180 75.6
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 8.0e-65 250.8 177 75.7
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 1.1e-64 250.4 177 75.7
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 1.1e-64 250.4 177 75.7
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 3.1e-64 248.8 180 73.9
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 4.0e-64 248.4 165 77.0
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 5.2e-64 248.1 182 73.6
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 5.2e-64 248.1 182 73.6
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 6.8e-64 247.7 177 74.6
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 2.6e-63 245.7 182 72.0
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 3.4e-63 245.4 177 75.1
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 4.4e-63 245.0 178 73.6
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 5.8e-63 244.6 180 73.9
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 5.8e-63 244.6 177 74.6
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 7.5e-63 244.2 178 73.6
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 7.5e-63 244.2 167 77.2
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 1.7e-62 243.0 180 75.0
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 2.9e-62 242.3 180 70.6
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 3.7e-62 241.9 183 72.1
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 3.7e-62 241.9 187 71.7
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 3.7e-62 241.9 177 72.9
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 4.9e-62 241.5 185 71.4
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 6.4e-62 241.1 156 77.6
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 8.3e-62 240.7 181 73.5
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 1.1e-61 240.4 174 72.4
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 1.9e-61 239.6 176 72.2
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 2.4e-61 239.2 151 81.5
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 3.2e-61 238.8 184 70.7
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 5.4e-61 238.0 157 77.1
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 5.4e-61 238.0 178 71.3
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 5.4e-61 238.0 180 73.3
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 9.2e-61 237.3 165 75.8
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 1.2e-60 236.9 178 72.5
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.2e-60 236.9 155 78.1
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.2e-60 236.9 177 71.8
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.1e-60 236.1 178 71.9
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 3.5e-60 235.3 159 78.0
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 6.0e-60 234.6 180 71.7
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 2.3e-59 232.6 150 79.3
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 3.9e-59 231.9 166 73.5
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 1.1e-58 230.3 161 75.2
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.1e-58 230.3 182 68.7
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.5e-58 229.9 182 69.2
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 1.9e-58 229.6 188 69.1
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.9e-58 229.6 172 72.7
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 3.3e-58 228.8 158 75.3
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 3.3e-58 228.8 152 77.0
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 3.3e-58 228.8 158 75.3
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 3.3e-58 228.8 158 75.3
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 3.3e-58 228.8 173 72.8
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 4.3e-58 228.4 169 71.6
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 4.3e-58 228.4 169 71.6
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.3e-58 228.4 157 75.2
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.3e-58 228.4 160 74.4
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 5.6e-58 228.0 178 69.1
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 5.6e-58 228.0 186 67.2
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 7.3e-58 227.6 176 70.5
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 9.5e-58 227.3 177 69.5
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 9.5e-58 227.3 169 71.0
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 1.6e-57 226.5 195 63.1
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 1.6e-57 226.5 152 76.3
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 2.1e-57 226.1 177 68.9
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 2.1e-57 226.1 176 68.8
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 2.1e-57 226.1 176 68.8
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 2.1e-57 226.1 183 68.3
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 2.8e-57 225.7 181 68.0
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 2.8e-57 225.7 186 66.1
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 4.7e-57 224.9 176 68.8
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 4.7e-57 224.9 176 68.8
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 4.7e-57 224.9 179 70.4
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 6.2e-57 224.6 184 66.8
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 8.1e-57 224.2 153 77.1
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 8.1e-57 224.2 173 70.5
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 8.1e-57 224.2 181 69.1
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 8.1e-57 224.2 153 73.2
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 1.1e-56 223.8 163 71.8
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 1.8e-56 223.0 173 71.1
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 3.1e-56 222.2 180 68.3
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 5.2e-56 221.5 163 69.3
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.2e-55 220.3 152 76.3
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.5e-55 219.9 167 68.3
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 1.5e-55 219.9 178 67.4
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 4.4e-55 218.4 185 67.6
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 5.8e-55 218.0 120 88.3
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 7.6e-55 217.6 177 65.5
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.3e-54 216.9 153 71.9
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 2.2e-54 216.1 185 65.9
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.7e-54 215.3 218 58.3
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 8.3e-54 214.2 188 64.4
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.4e-53 213.4 179 67.0
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.9e-53 213.0 179 67.0
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.4e-53 212.6 184 63.6
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 4.1e-53 211.8 124 83.1
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 5.4e-53 211.5 290 47.6
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.6e-52 209.9 289 47.4
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 1.0e-51 207.2 179 64.2
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.3e-51 206.8 180 62.8
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 2.3e-51 206.1 146 70.5
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.0e-51 205.7 173 65.9
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 2.1e-49 199.5 151 74.8
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 4.0e-48 195.3 176 63.1
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 5.2e-48 194.9 135 76.3
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.0e-47 193.0 178 57.9
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.0e-47 193.0 149 65.8
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 2.6e-47 192.6 147 65.3
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 2.6e-47 192.6 191 59.2
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 4.4e-47 191.8 147 70.1
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 4.4e-47 191.8 179 61.5
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 6.0e-44 181.4 183 61.2
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 1.9e-42 176.4 157 60.5
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 3.6e-41 172.2 123 68.3
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.3e-38 163.7 154 57.1
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 1.1e-37 160.6 217 50.2
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 7.1e-37 157.9 151 55.0
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.1e-32 144.1 87 80.5
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 3.1e-32 142.5 82 87.8
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.1e-32 142.5 87 81.6
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 4.0e-32 142.1 87 81.6
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 2.6e-31 139.4 178 50.0
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 4.5e-31 138.7 82 85.4
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 1.4e-29 133.7 105 58.1
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 4.2e-29 132.1 82 81.7
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 2.1e-28 129.8 87 80.5
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 2.5e-26 122.9 97 58.8
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 8.4e-22 107.8 100 53.0
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 6.7e-19 98.2 94 61.7
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.4e-16 90.5 80 65.0
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.4e-16 89.7 105 52.4
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 1.2e-15 87.4 54 79.6
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 1.2e-15 87.4 77 63.6
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 4.2e-13 79.0 54 70.4
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 9.7e-10 67.8 69 43.5
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 2.4e-08 63.2 89 49.4
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 3.1e-08 62.8 97 48.5
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 6.9e-08 61.6 120 41.7
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 1.5e-07 60.5 97 48.5
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.5e-07 60.5 97 48.5
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 5.0e-06 55.5 38 71.1


User provided reference genes

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