Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 2.0e-200 702.2 355 100.0
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 3.5e-128 462.2 313 76.7
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.3e-127 460.3 313 75.7
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 6.7e-127 458.0 313 75.1
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 1.5e-126 456.8 313 75.4
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 2.5e-126 456.1 313 75.1
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 1.6e-125 453.4 313 74.1
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 2.1e-125 453.0 306 75.5
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 1.1e-124 450.7 310 74.8
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 2.4e-124 449.5 333 71.5
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 6.9e-124 448.0 313 75.1
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 6.4e-122 441.4 306 72.9
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 1.1e-121 440.7 306 72.2
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 1.1e-121 440.7 306 73.9
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 7.1e-121 438.0 308 73.4
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 7.1e-121 438.0 313 71.2
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 2.1e-120 436.4 313 73.5
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 6.0e-120 434.9 308 73.7
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 6.0e-120 434.9 314 70.7
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 1.8e-119 433.3 312 72.4
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 2.3e-119 433.0 313 72.8
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 3.0e-119 432.6 306 71.6
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 1.1e-118 430.6 312 70.8
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 5.6e-118 428.3 310 71.6
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 9.6e-118 427.6 305 70.5
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 9.6e-118 427.6 308 71.1
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 9.6e-118 427.6 312 70.2
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 1.3e-117 427.2 305 70.2
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 1.3e-117 427.2 309 71.8
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 1.3e-117 427.2 319 69.9
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 1.3e-117 427.2 308 70.5
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 2.8e-117 426.0 308 69.8
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 4.8e-117 425.2 305 71.8
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 6.2e-117 424.9 306 72.5
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 6.2e-117 424.9 305 71.8
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 6.2e-117 424.9 310 71.9
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 8.2e-117 424.5 309 70.2
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 2.4e-116 422.9 308 70.5
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 4.0e-116 422.2 310 71.3
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 5.3e-116 421.8 310 72.3
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 1.2e-115 420.6 312 69.6
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 1.5e-115 420.2 311 69.8
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 2.0e-115 419.9 315 69.2
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 1.0e-114 417.5 305 74.1
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 1.7e-114 416.8 302 73.2
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 2.2e-114 416.4 310 71.3
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 2.9e-114 416.0 306 73.5
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 4.9e-114 415.2 304 71.4
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 4.9e-114 415.2 305 70.2
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 6.5e-114 414.8 306 70.3
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 6.5e-114 414.8 305 73.1
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 4.2e-113 412.1 316 69.0
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 1.6e-112 410.2 306 69.0
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 2.1e-112 409.8 313 67.7
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 2.1e-112 409.8 312 68.9
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 4.6e-112 408.7 314 68.2
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 6.1e-112 408.3 313 68.1
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 6.1e-112 408.3 312 68.6
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 1.3e-111 407.1 312 68.3
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 2.3e-111 406.4 308 67.9
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 3.0e-111 406.0 312 67.9
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 6.7e-111 404.8 314 67.5
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 6.7e-111 404.8 310 66.5
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 8.7e-111 404.4 315 67.3
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 1.5e-110 403.7 314 67.8
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 1.5e-110 403.7 306 68.0
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 1.9e-110 403.3 312 67.3
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 3.3e-110 402.5 313 66.8
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 5.7e-110 401.7 313 67.4
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 5.7e-110 401.7 312 67.6
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 1.6e-109 400.2 313 66.1
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 2.8e-109 399.4 313 66.8
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 2.8e-109 399.4 299 69.9
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 3.7e-109 399.1 312 67.3
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 6.3e-109 398.3 314 66.9
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 8.2e-109 397.9 314 65.9
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 1.1e-108 397.5 312 67.3
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 1.1e-108 397.5 312 67.0
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 1.1e-108 397.5 314 67.8
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 1.8e-108 396.7 318 66.0
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 4.1e-108 395.6 287 71.8
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 5.3e-108 395.2 309 65.0
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 2.6e-107 392.9 308 67.2
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.4e-107 392.5 308 66.9
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 4.5e-107 392.1 314 65.6
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.3e-106 390.6 315 65.4
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 1.3e-106 390.6 314 66.2
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 3.8e-106 389.0 313 66.8
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.4e-105 387.1 314 63.4
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 7.2e-105 384.8 311 63.3
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 3.0e-103 379.4 306 64.4
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 3.4e-99 365.9 311 65.0
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 2.3e-95 353.2 239 74.9
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 3.5e-91 339.3 264 68.6
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 1.8e-87 327.0 242 72.7
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 1.3e-85 320.9 236 70.8
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.4e-84 316.6 211 77.3
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 2.4e-84 316.6 245 70.6
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 1.2e-80 304.3 332 52.1
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 2.4e-76 290.0 201 74.1
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 2.2e-74 283.5 328 51.2
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 3.0e-71 273.1 210 72.4
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 4.7e-56 222.6 305 43.3
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 6.1e-56 222.2 306 45.8
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 3.1e-55 219.9 306 40.8
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 8.9e-47 191.8 195 53.3
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 1.5e-46 191.0 309 39.8
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 2.0e-30 137.5 102 70.6
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 2.1e-27 127.5 180 41.7
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 6.6e-26 122.5 111 57.7
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 7.3e-25 119.0 119 52.9
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 1.2e-22 111.7 114 57.0
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 5.8e-22 109.4 103 56.3
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 2.4e-20 104.0 94 60.6
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 7.9e-19 99.0 112 49.1
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 7.9e-19 99.0 149 45.6
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 3.8e-13 80.1 69 56.5
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 7.1e-12 75.9 241 26.1
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.1e-08 64.3 237 26.6
HanXRQChr08g0214621 Helianthus annuus HOM05D006898 ORTHO05D008506 2.4e-07 60.8 36 75.0


User provided reference genes

Program Settings