Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 8.3e-246 853.2 416 100.0
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.2e-174 615.9 429 70.2
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 5.2e-171 604.7 424 70.8
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 3.3e-170 602.1 419 71.4
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 2.2e-169 599.4 425 69.6
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.1e-168 597.0 425 69.9
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 1.4e-168 596.7 419 70.4
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 1.0e-166 590.5 419 70.9
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 7.2e-165 584.3 426 68.5
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 9.4e-165 583.9 422 69.7
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 9.4e-165 583.9 420 69.5
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.2e-164 583.6 422 67.5
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 1.2e-164 583.6 452 65.5
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 1.6e-164 583.2 422 67.8
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.1e-164 582.8 422 67.3
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 2.1e-164 582.8 420 69.5
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 2.7e-164 582.4 425 67.3
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 4.7e-164 581.6 423 70.2
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 6.1e-164 581.3 421 67.5
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.0e-163 578.6 421 67.0
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.2e-163 578.2 418 67.0
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 2.6e-162 575.9 421 69.8
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.2e-161 572.8 423 68.1
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 3.1e-160 568.9 422 68.7
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 5.4e-160 568.2 422 68.7
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 7.0e-160 567.8 425 65.2
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 2.5e-157 559.3 424 66.7
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 5.5e-157 558.1 432 64.8
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 9.5e-157 557.4 418 65.8
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 3.6e-156 555.4 423 65.5
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 3.6e-156 555.4 423 65.5
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 4.7e-156 555.1 418 66.0
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 8.0e-156 554.3 421 67.0
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 1.8e-155 553.1 422 64.2
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 4.0e-155 552.0 417 67.4
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 4.0e-155 552.0 420 67.4
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 4.0e-155 552.0 417 67.6
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 4.0e-155 552.0 422 64.5
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 4.0e-155 552.0 418 65.3
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.5e-154 550.1 427 64.6
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 2.8e-153 545.8 419 64.9
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 3.7e-153 545.4 419 64.7
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 6.3e-153 544.7 422 63.5
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 2.4e-152 542.7 423 63.1
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 7.0e-152 541.2 420 65.2
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 2.7e-151 539.3 419 63.2
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 2.7e-151 539.3 431 63.3
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 4.5e-151 538.5 422 64.7
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 2.9e-150 535.8 422 63.5
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 6.6e-150 534.6 418 64.1
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 7.3e-149 531.2 412 63.3
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.6e-148 530.0 412 63.1
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.8e-148 529.3 420 62.6
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.8e-148 529.3 428 63.8
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 3.6e-148 528.9 394 67.8
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 3.6e-148 528.9 435 63.2
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 4.7e-148 528.5 420 62.6
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 6.1e-148 528.1 492 55.7
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 8.0e-148 527.7 420 62.4
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.3e-147 526.2 428 63.1
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 3.0e-147 525.8 423 61.0
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.2e-146 523.9 425 61.9
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.3e-145 520.4 388 65.2
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 1.8e-144 516.5 419 62.3
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 1.8e-144 516.5 419 62.8
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 5.4e-144 515.0 420 62.1
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 1.2e-143 513.8 420 61.7
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 1.6e-143 513.5 395 63.8
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 4.6e-143 511.9 520 52.7
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 5.9e-143 511.5 422 61.6
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 2.3e-142 509.6 416 61.5
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 8.6e-142 507.7 523 52.8
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 2.5e-141 506.1 426 61.0
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 4.3e-141 505.4 426 61.0
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 5.6e-141 505.0 418 61.0
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 7.3e-141 504.6 431 57.5
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 9.5e-141 504.2 420 61.2
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.8e-140 502.7 418 59.1
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.0e-139 500.7 420 59.0
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 1.8e-139 500.0 428 57.2
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.5e-138 496.9 418 58.4
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 2.0e-138 496.5 418 60.8
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 4.4e-138 495.4 423 57.0
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 2.2e-137 493.0 468 54.9
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 4.9e-137 491.9 423 57.2
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 4.1e-136 488.8 470 55.1
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 1.2e-135 487.3 414 57.2
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 7.8e-135 484.6 401 62.1
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 2.3e-134 483.0 423 57.0
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 3.0e-134 482.6 409 62.1
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 1.6e-132 476.9 416 57.9
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 2.8e-132 476.1 417 57.8
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 6.8e-131 471.5 408 58.1
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 1.2e-130 470.7 416 57.0
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 4.1e-128 462.2 413 55.4
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 8.6e-126 454.5 457 52.1
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 4.7e-124 448.7 366 62.0
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 6.2e-124 448.4 411 54.7
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 8.1e-124 448.0 409 55.3
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 8.9e-123 444.5 431 53.1
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 1.2e-122 444.1 412 54.1
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 5.8e-122 441.8 414 52.9
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 2.9e-121 439.5 451 49.4
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 3.2e-120 436.0 413 52.1
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 1.6e-119 433.7 413 52.1
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 1.6e-119 433.7 413 52.1
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 3.9e-118 429.1 413 51.6
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 5.6e-117 425.2 448 48.9
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.0e-114 416.8 345 61.2
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.0e-114 416.8 345 61.2
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 9.0e-107 391.3 439 47.8
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 1.5e-106 390.6 437 47.4
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 7.1e-104 381.7 425 49.6
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 3.9e-102 375.9 417 47.2
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 2.8e-100 369.8 416 48.3
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 3.5e-95 352.8 241 67.6
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 9.6e-93 344.7 424 47.9
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.9e-88 330.5 172 86.0
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 4.2e-88 329.3 257 62.6
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 2.3e-78 297.0 340 47.6
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 3.3e-77 293.1 425 38.4
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.6e-76 290.8 143 90.2
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 5.3e-75 285.8 160 80.6
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 3.0e-70 270.0 536 33.4
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 8.8e-70 268.5 144 81.9
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 6.7e-54 215.7 123 76.4
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.2e-48 196.8 90 91.1
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.7e-36 156.8 205 43.9
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 3.8e-33 146.7 120 60.0
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 1.3e-28 131.7 72 80.6
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.1e-27 128.6 73 83.6
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.1e-27 128.6 73 83.6
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.7e-25 121.3 66 78.8
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 1.8e-22 111.3 59 79.7
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 2.2e-20 104.4 68 73.5
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 4.9e-20 103.2 87 49.4
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.1e-16 92.0 75 64.0
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 1.5e-16 91.7 191 33.0
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 2.0e-13 81.3 62 64.5
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 2.0e-13 81.3 74 58.1


User provided reference genes

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