Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 0.0e+00 1910.6 960 100.0
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 0.0e+00 1170.2 979 63.4
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 0.0e+00 1159.8 983 64.4
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1141.7 981 63.5
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 0.0e+00 1139.0 956 64.5
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 0.0e+00 1127.9 975 63.1
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1127.5 988 62.8
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 0.0e+00 1113.6 1004 61.5
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 0.0e+00 1106.3 905 65.7
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 0.0e+00 1102.4 978 62.2
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 0.0e+00 1094.3 974 61.3
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1084.3 989 61.1
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.0e-303 1045.8 970 59.8
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.4e-301 1039.6 976 58.6
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 8.8e-299 1030.4 946 58.7
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 3.3e-298 1028.5 952 59.1
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 3.1e-296 1021.9 975 58.3
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.2e-292 1010.0 968 58.0
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 5.2e-291 1004.6 976 58.0
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.5e-290 1003.0 974 58.0
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.6e-287 993.0 951 58.0
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 2.0e-287 992.6 939 58.9
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.3e-286 989.9 977 56.6
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 8.5e-286 987.3 979 56.3
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.1e-285 986.9 991 55.4
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 8.0e-284 980.7 922 59.8
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 5.2e-283 978.0 979 55.8
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 6.8e-283 977.6 945 56.1
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 2.6e-282 975.7 965 56.0
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.7e-281 971.8 977 56.9
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.1e-280 970.3 967 55.8
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.1e-280 968.8 946 56.1
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.1e-280 968.4 977 56.3
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 2.0e-279 966.1 946 55.9
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.0e-278 963.8 1001 54.5
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.3e-278 963.4 978 56.2
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 1.7e-278 963.0 957 56.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.9e-277 959.5 982 55.8
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.9e-277 959.5 982 54.2
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 5.5e-277 958.0 969 54.8
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 7.2e-277 957.6 968 55.1
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 7.2e-277 957.6 984 54.1
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 2.1e-276 956.1 985 54.0
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 2.8e-276 955.7 982 54.4
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 1.8e-275 953.0 939 57.1
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.8e-275 953.0 971 54.6
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 2.0e-274 949.5 973 55.0
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 3.4e-274 948.7 968 54.8
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 5.7e-274 948.0 962 56.4
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.1e-272 943.7 970 54.3
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 5.4e-272 941.4 981 53.5
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 7.8e-271 937.6 945 54.1
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 3.8e-270 935.3 989 54.4
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 3.8e-270 935.3 989 54.4
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 6.6e-270 934.5 977 53.9
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 6.6e-270 934.5 1055 51.3
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.6e-268 929.9 986 53.4
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 5.2e-267 924.9 978 54.8
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 5.2e-267 924.9 820 60.2
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 6.8e-267 924.5 975 53.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 2.6e-266 922.5 926 55.7
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.3e-265 920.2 979 53.7
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.7e-265 919.8 976 53.6
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 4.1e-264 915.2 838 59.7
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 5.9e-263 911.4 951 53.0
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 6.6e-262 907.9 975 54.4
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 9.5e-261 904.0 976 52.6
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.4e-259 900.2 975 54.2
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.1e-259 899.0 974 54.4
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 5.4e-256 888.3 940 52.8
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 2.0e-255 886.3 965 52.7
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 4.3e-253 878.6 952 52.7
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 1.6e-252 876.7 914 53.6
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 2.8e-252 875.9 958 51.7
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 4.7e-252 875.2 942 53.8
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 5.2e-251 871.7 955 52.1
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.2e-250 870.5 959 51.8
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 1.2e-250 870.5 962 50.8
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 5.8e-250 868.2 882 54.4
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 7.5e-250 867.8 942 52.8
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.2e-247 860.5 978 50.7
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.7e-247 859.4 955 51.8
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.0e-246 857.4 720 62.5
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 5.1e-246 855.1 957 51.1
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 2.6e-242 842.8 914 51.4
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 4.9e-241 838.6 930 51.6
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 8.4e-241 837.8 935 51.2
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 3.2e-240 835.9 953 51.2
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 1.6e-239 833.6 973 49.9
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.9e-238 828.9 951 50.7
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 1.6e-236 823.5 992 49.1
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.1e-236 823.2 967 49.1
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.8e-235 820.1 974 49.9
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 2.2e-233 813.1 692 60.8
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 4.2e-232 808.9 711 59.8
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.1e-224 784.3 929 49.1
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 5.4e-224 781.9 804 54.2
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.0e-222 777.7 992 46.2
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.1e-220 770.0 995 46.8
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 3.7e-220 769.2 699 58.2
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 8.2e-212 741.5 988 47.2
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.9e-206 722.6 611 62.5
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.8e-203 713.8 822 49.6
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 2.1e-199 700.3 781 48.9
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.0e-198 698.0 968 44.9
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.3e-196 691.0 960 45.2
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 2.0e-194 683.7 851 48.1
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.2e-191 674.5 658 54.3
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.0e-189 667.2 741 51.3
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 5.0e-177 625.9 457 70.7
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 7.5e-173 612.1 440 71.4
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.2e-172 610.5 676 50.0
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 2.7e-170 603.6 683 48.2
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 7.0e-163 578.9 675 49.5
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.4e-155 554.7 628 47.3
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.7e-154 550.4 498 56.8
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.9e-153 547.0 517 58.8
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.5e-152 544.7 952 38.6
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 8.0e-151 538.9 651 47.3
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.0e-150 536.6 712 46.6
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.6e-149 533.9 955 38.3
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.3e-137 494.2 750 42.9
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 2.0e-125 454.5 659 40.7
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 8.7e-121 439.1 673 38.8
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.8e-111 406.8 545 46.1
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 9.0e-102 375.9 445 45.4
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 1.1e-99 369.0 281 69.8
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.8e-97 361.7 285 65.6
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 5.7e-88 330.1 436 46.1
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.2e-79 301.6 215 71.6
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 2.0e-72 278.5 195 72.3
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 5.7e-72 276.9 259 58.3
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.9e-68 264.6 182 73.6
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 3.7e-63 247.7 244 57.8
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 3.5e-61 241.1 226 52.2
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 7.2e-59 233.4 172 70.9
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.5e-51 207.2 138 77.5
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 8.0e-50 203.4 170 60.6
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 2.3e-44 185.3 170 54.7
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.2e-42 179.5 311 39.5
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 4.7e-42 177.6 278 42.8
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 7.8e-37 160.2 116 63.8
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 4.7e-34 151.0 576 26.7
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 3.7e-31 141.4 187 47.6
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 1.4e-30 139.4 300 35.3
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 4.3e-27 127.9 76 81.6
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.5e-19 102.8 544 24.4
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.6e-18 99.4 93 51.6
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 3.4e-16 91.7 345 28.1
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.6e-13 82.8 47 83.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 9.9e-08 63.5 47 57.4


User provided reference genes

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