Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.7e-302 1041.2 529 100.0
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 3.7e-291 1004.2 529 97.7
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.6e-238 829.3 512 81.6
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.5e-236 822.8 463 86.8
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.5e-236 822.8 495 82.0
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.6e-236 822.0 514 80.4
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 7.6e-236 820.5 524 79.4
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 6.4e-235 817.4 519 79.8
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 8.4e-235 817.0 514 79.6
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.6e-233 812.8 516 80.2
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.1e-233 812.4 485 82.1
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 2.1e-233 812.4 465 84.5
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 3.5e-233 811.6 513 78.8
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 7.9e-233 810.4 525 79.0
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.8e-232 809.3 526 77.8
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 3.0e-232 808.5 508 79.9
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.5e-231 806.2 476 83.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 3.3e-231 805.1 464 84.9
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.6e-231 804.3 500 80.4
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 9.6e-231 803.5 519 78.6
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.3e-230 803.1 492 80.7
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.8e-230 802.0 542 76.0
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.8e-230 802.0 519 77.5
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 4.8e-230 801.2 523 76.9
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.2e-230 800.8 523 76.7
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 6.2e-230 800.8 469 83.4
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.1e-229 800.0 486 81.1
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 4.0e-229 798.1 461 84.2
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 4.0e-229 798.1 528 77.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.9e-229 797.3 553 74.5
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 6.9e-229 797.3 528 75.4
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 9.0e-229 797.0 491 79.8
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.0e-228 795.8 551 74.8
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.6e-228 795.4 464 84.1
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 2.6e-228 795.4 506 77.9
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 3.4e-228 795.0 518 77.8
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 3.4e-228 795.0 520 76.5
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 5.8e-228 794.3 526 76.0
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 7.6e-228 793.9 519 77.1
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.0e-227 793.5 518 77.4
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.3e-227 793.1 478 81.4
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 1.3e-227 793.1 524 77.3
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.2e-227 792.3 520 76.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 2.2e-227 792.3 534 74.5
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 2.9e-227 792.0 528 76.5
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 6.5e-227 790.8 520 76.5
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 8.4e-227 790.4 487 79.5
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.4e-226 789.6 515 77.7
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.9e-226 789.3 515 76.3
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 4.2e-226 788.1 521 76.0
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 4.2e-226 788.1 512 78.1
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.5e-226 787.7 515 77.3
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 5.5e-226 787.7 469 81.7
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.2e-225 786.6 524 75.4
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.2e-225 786.6 522 76.2
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 2.1e-225 785.8 462 81.8
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.7e-225 785.4 513 76.4
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 3.5e-225 785.0 462 82.7
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 3.5e-225 785.0 508 76.8
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.3e-224 782.3 504 77.8
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.0e-224 781.9 459 83.0
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 3.9e-224 781.6 514 76.8
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 6.7e-224 780.8 536 74.4
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 2.5e-223 778.9 518 74.7
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.3e-223 778.1 478 79.3
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.3e-222 776.5 522 74.7
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.6e-222 776.2 511 76.3
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.1e-222 775.8 472 80.1
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.4e-221 773.1 530 73.6
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.8e-221 772.7 472 79.4
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 4.1e-221 771.5 548 73.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.3e-221 771.2 470 80.6
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 9.0e-221 770.4 495 76.8
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 4.5e-220 768.1 492 77.2
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 7.6e-220 767.3 470 80.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.0e-219 766.9 486 76.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.8e-219 765.0 509 73.9
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 5.0e-219 764.6 483 77.4
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.2e-217 760.0 460 79.1
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.1e-217 759.2 460 78.7
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.7e-217 758.8 503 74.4
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.7e-217 758.8 525 73.1
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 6.1e-217 757.7 460 78.5
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.0e-216 756.9 490 75.3
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.3e-216 756.5 522 72.6
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.8e-216 756.1 464 78.9
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-216 756.1 520 72.7
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.3e-216 755.7 518 72.6
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.3e-216 755.7 488 76.4
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 2.3e-216 755.7 460 78.0
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 3.9e-216 755.0 465 80.2
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.9e-216 755.0 518 72.6
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 8.7e-216 753.8 502 74.9
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 9.7e-215 750.4 552 69.9
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.6e-214 749.6 564 67.9
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 6.3e-214 747.7 519 72.6
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.8e-213 746.1 477 76.3
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 9.1e-213 743.8 506 73.7
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.8e-211 738.4 459 79.3
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 5.0e-211 738.0 539 69.9
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 9.4e-210 733.8 504 71.0
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.1e-209 732.6 530 71.7
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.4e-208 729.9 520 74.2
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.4e-205 719.9 474 74.1
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 3.8e-203 711.8 468 73.1
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.8e-200 703.0 471 72.4
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 3.9e-200 701.8 467 71.7
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 3.7e-198 695.3 482 74.5
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.1e-197 693.7 495 69.1
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.8e-197 693.0 459 73.9
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 4.1e-197 691.8 430 78.1
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 3.5e-196 688.7 418 79.4
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.9e-195 685.6 515 69.1
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.7e-193 679.1 414 78.5
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 4.8e-190 668.3 446 76.5
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 8.2e-190 667.5 425 79.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.3e-189 664.8 445 76.6
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.1e-185 651.4 371 85.2
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.0e-184 650.6 453 68.9
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 2.0e-183 646.4 504 65.5
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 2.6e-183 646.0 373 83.4
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 4.8e-182 641.7 397 80.9
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 3.8e-179 632.1 517 64.6
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.0e-176 624.0 782 48.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 5.9e-172 608.2 425 69.9
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-169 600.5 504 61.9
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 2.8e-169 599.4 453 68.2
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.8e-160 570.1 347 81.8
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 6.2e-153 545.0 409 70.4
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-116 424.1 377 61.5
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 2.8e-113 413.3 237 85.2
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 4.8e-113 412.5 317 68.8
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.3e-105 387.9 292 68.2
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.0e-95 354.0 456 41.7
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.0e-94 351.7 467 40.5
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 4.2e-93 346.3 245 71.8
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.1e-88 330.1 453 40.0
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.6e-84 317.8 201 76.1
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.1e-77 295.0 232 63.4
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.9e-62 243.8 384 41.7
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.5e-61 240.7 131 88.5
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 6.3e-57 226.1 167 69.5
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 4.1e-56 223.4 160 68.8
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.3e-54 217.6 201 58.2
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 8.6e-54 215.7 165 68.5
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.2e-44 185.3 98 89.8
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.8e-44 184.1 123 68.3
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-43 182.2 131 65.6
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-43 181.4 249 43.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.2e-42 178.7 374 30.5
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.7e-39 167.5 119 72.3
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.0e-38 165.6 90 87.8
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 5.4e-32 143.3 80 86.2
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.2e-31 142.1 124 54.8
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.7e-30 138.3 93 74.2
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.9e-29 134.8 290 31.4
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.2e-26 125.6 74 81.1
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 4.4e-26 123.6 100 63.0
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 1.3e-25 122.1 100 63.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 6.6e-14 83.2 57 68.4
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.1e-11 75.9 118 47.5
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.8e-11 75.1 47 72.3
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 2.4e-11 74.7 43 76.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 2.6e-10 71.2 41 75.6
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.7e-07 61.2 35 77.1
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 1.0e-06 59.3 38 76.3
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 1.3e-06 58.9 51 58.8


User provided reference genes

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