Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 8.9e-84 313.5 155 100.0
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 1.5e-51 206.5 162 66.0
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 4.4e-51 204.9 163 62.0
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 2.9e-50 202.2 161 65.2
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 4.9e-50 201.4 164 62.8
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 1.1e-49 200.3 166 60.2
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 2.4e-49 199.1 162 64.2
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 5.4e-49 198.0 164 62.2
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 5.4e-49 198.0 163 61.3
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 9.2e-49 197.2 167 61.7
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 1.2e-48 196.8 160 62.5
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 2.7e-48 195.7 162 61.7
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 6.0e-48 194.5 166 60.8
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 1.3e-47 193.4 166 60.2
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 2.3e-47 192.6 163 60.1
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 2.3e-47 192.6 158 62.7
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 2.3e-47 192.6 158 62.7
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 5.1e-47 191.4 158 62.0
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 5.1e-47 191.4 164 61.0
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 6.6e-47 191.0 164 60.4
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 8.7e-47 190.7 166 62.0
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 1.1e-46 190.3 166 61.4
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 1.1e-46 190.3 163 60.7
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 1.5e-46 189.9 160 58.8
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 1.5e-46 189.9 161 62.1
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.9e-46 189.5 158 63.3
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 1.9e-46 189.5 193 55.4
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 4.3e-46 188.3 162 60.5
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 5.6e-46 188.0 164 61.6
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 1.6e-45 186.4 166 60.2
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 2.1e-45 186.0 157 61.8
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 2.8e-45 185.7 164 58.5
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 6.2e-45 184.5 160 60.0
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 1.4e-44 183.3 156 62.2
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 6.9e-44 181.0 162 57.4
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 9.0e-44 180.6 155 59.4
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.2e-43 180.3 162 58.6
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 2.6e-43 179.1 157 58.6
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 5.8e-43 177.9 158 58.9
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 7.6e-43 177.6 157 58.0
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 1.7e-42 176.4 162 61.1
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 2.9e-42 175.6 155 58.1
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 6.4e-42 174.5 158 55.7
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 1.4e-41 173.3 166 54.2
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 1.9e-41 172.9 160 58.1
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 4.2e-41 171.8 164 56.1
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 9.3e-41 170.6 162 57.4
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 9.3e-41 170.6 159 56.0
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 6.0e-40 167.9 164 53.7
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 1.0e-39 167.2 167 52.1
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 1.3e-39 166.8 164 54.3
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 1.5e-38 163.3 158 54.4
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 2.1e-37 159.5 139 59.0
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 1.1e-36 157.1 162 53.7
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 2.4e-36 156.0 186 47.8
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 4.0e-36 155.2 159 51.6
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 3.4e-35 152.1 133 59.4
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 3.4e-35 152.1 106 68.9
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 7.6e-35 151.0 152 52.0
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 3.8e-34 148.7 134 61.2
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 1.4e-33 146.7 137 55.5
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 4.2e-33 145.2 176 44.9
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 1.2e-32 143.7 141 56.0
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 2.7e-32 142.5 159 49.7
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 3.0e-31 139.0 132 55.3
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 3.3e-30 135.6 132 51.5
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 5.6e-30 134.8 128 56.2
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 1.1e-28 130.6 125 55.2
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 2.0e-27 126.3 130 53.1
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 6.5e-26 121.3 161 38.5
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 1.1e-25 120.6 162 45.1
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 6.0e-24 114.8 155 43.9
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 3.0e-23 112.5 110 51.8
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 1.5e-22 110.2 94 54.3
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 1.1e-20 104.0 85 56.5
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 1.3e-18 97.1 80 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 2.9e-18 95.9 122 40.2
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 3.0e-15 85.9 123 42.3
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 5.1e-15 85.1 81 59.3
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 1.4e-12 77.0 82 52.4


User provided reference genes

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