Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 4646.6 2394 100.0
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 3145.1 2434 66.8
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3086.2 2424 65.7
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 3079.3 2426 64.3
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 3046.1 2434 63.6
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 3026.5 2433 63.3
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3017.6 2467 62.5
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3014.6 2467 62.5
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3006.5 2467 62.3
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2999.1 2427 64.2
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2996.1 2456 63.2
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2992.2 2467 62.1
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2973.3 2406 63.8
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2950.2 2443 62.4
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2946.4 2439 61.7
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2852.4 2426 60.4
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2833.1 2427 60.5
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2832.0 2461 59.8
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2819.3 2461 59.7
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2811.2 2439 59.7
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2796.5 2427 59.8
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2793.5 2439 59.7
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2787.7 2427 58.8
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2785.4 2427 58.8
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2785.0 2436 59.5
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2765.3 2435 58.8
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2763.0 2439 58.3
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2758.8 2423 59.1
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2741.8 2431 58.7
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2735.3 2477 57.9
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2731.1 2429 58.6
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2728.0 2435 58.3
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2715.6 2425 58.0
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2715.6 2430 57.8
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2712.6 2427 58.3
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2708.3 2424 57.8
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2705.6 2434 57.7
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2694.8 2447 58.3
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2689.4 2431 58.0
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2676.4 2468 57.0
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2658.2 2433 57.0
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2650.5 2101 64.7
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2640.9 2439 56.0
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2612.8 2432 55.3
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2612.8 2409 56.3
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2589.7 2395 56.5
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2589.7 2427 55.4
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2552.7 2428 54.8
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2552.3 2432 54.7
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2538.8 2434 55.3
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2520.0 2411 54.5
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2479.5 2426 53.4
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2475.7 2392 54.0
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2457.9 2423 52.9
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2454.5 2424 52.6
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2447.9 2424 54.1
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2442.5 2412 54.1
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2439.8 2445 52.4
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2437.9 2437 52.7
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2437.9 2430 52.5
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2437.1 2427 53.5
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2434.8 2425 52.6
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2434.4 2414 53.8
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2422.9 2439 53.4
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2419.0 2418 53.2
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2415.2 2438 53.2
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2412.1 2423 52.9
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2410.9 2468 52.9
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2400.2 2386 52.7
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2391.7 2411 51.8
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2385.1 2418 52.4
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2383.2 2415 53.1
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2383.2 2425 51.9
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2372.8 2433 50.8
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2370.5 2419 51.7
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2370.5 2427 51.7
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2369.7 2436 51.5
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2364.0 2411 51.4
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2359.3 2414 52.9
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2358.6 2424 51.7
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2356.6 2420 51.4
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2355.5 2422 51.9
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2349.7 2431 51.0
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2333.1 2458 50.8
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2326.2 2078 59.4
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2323.5 2078 59.5
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2322.4 2416 52.6
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 2152.9 1842 59.8
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2095.1 2237 50.3
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2032.3 2384 45.6
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1908.3 2410 45.0
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1886.3 2488 43.3
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1768.4 1454 61.8
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1758.4 1454 61.7
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1720.3 1515 59.7
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1676.4 2339 41.1
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1651.0 1640 53.0
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1571.2 1384 59.2
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1414.8 1097 64.8
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1412.5 1456 51.8
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1289.2 1379 50.3
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1281.9 1164 57.0
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1276.5 1564 45.2
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1216.1 1423 47.6
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1169.5 1043 57.8
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 9.8e-299 1031.6 1042 52.2
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 9.2e-297 1025.0 1013 52.8
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.3e-282 978.0 2568 28.9
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 1.6e-277 961.1 1387 40.9
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 2.4e-268 930.6 918 52.9
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 2.3e-247 860.9 2082 30.5
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 1.8e-244 851.3 2167 30.0
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.3e-242 845.1 854 52.7
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 6.7e-223 779.6 761 50.5
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 5.9e-219 766.5 1489 35.9
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 8.8e-207 726.1 800 48.2
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 2.0e-190 671.8 2429 25.5
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 2.4e-180 638.3 811 42.8
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.1e-172 612.8 568 53.0
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.7e-117 429.5 474 50.0
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 5.5e-116 424.5 322 64.3
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 4.7e-115 421.4 471 49.3
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 3.2e-108 398.7 398 54.0
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 6.3e-104 384.4 267 71.2
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 1.3e-96 360.1 327 55.7
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 8.3e-88 330.9 431 43.2
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 6.4e-80 304.7 382 43.2
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 8.6e-77 294.3 363 43.8
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 2.7e-70 272.7 223 61.4
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.0e-69 270.8 321 48.3
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 1.1e-63 250.8 437 38.4
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 5.1e-61 241.9 483 32.1
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 2.9e-56 226.1 150 73.3
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.9e-52 213.4 277 46.6
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.0e-50 205.7 270 47.0
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.2e-47 196.1 380 33.7
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.3e-45 190.7 122 74.6
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 8.7e-45 188.0 146 64.4
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.9e-44 186.8 187 51.3
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 9.6e-44 184.5 310 38.1
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 2.2e-40 173.3 804 22.0
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.9e-40 172.9 123 66.7
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 1.6e-35 157.1 139 63.3
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.2e-33 151.0 110 70.0
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.3e-32 147.5 211 38.9
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.9e-32 146.4 135 52.6
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.3e-29 136.7 291 33.0
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 8.7e-29 134.8 193 40.4
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 3.7e-27 129.4 359 27.9
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 1.8e-26 127.1 97 64.9
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 2.9e-24 119.8 136 44.1
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 6.5e-24 118.6 125 46.4
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.7e-22 113.2 83 66.3
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.4e-18 100.1 173 35.8
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 2.6e-17 96.7 165 39.4
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 4.5e-17 95.9 75 54.7
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 5.9e-17 95.5 75 54.7
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 6.5e-16 92.0 189 36.0
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 3.2e-15 89.7 77 55.8
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 6.3e-11 75.5 129 38.8
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 5.3e-10 72.4 94 42.6
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 1.0e-08 68.2 102 35.3
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.5e-08 65.5 129 31.0
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 6.5e-08 65.5 51 58.8
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 6.5e-08 65.5 51 58.8
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 6.5e-08 65.5 51 58.8
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 1.4e-07 64.3 139 32.4
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 1.9e-07 63.9 42 73.8
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 9.4e-07 61.6 65 47.7


User provided reference genes

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