Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 0.0e+00 1175.6 744 100.0
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 0.0e+00 1147.5 744 97.8
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.0e-41 174.1 433 34.4
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.3e-39 169.1 433 33.9
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.8e-39 167.5 433 33.7
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 4.9e-39 167.2 393 35.1
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 2.4e-38 164.9 423 31.7
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 3.2e-38 164.5 393 35.9
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.6e-37 162.2 427 33.3
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.7e-36 156.4 762 27.0
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 8.7e-36 156.4 398 34.7
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.1e-35 156.0 461 33.6
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.1e-35 156.0 404 33.9
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 3.3e-35 154.5 404 33.7
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.8e-34 151.4 775 26.7
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 6.2e-34 150.2 439 33.9
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.1e-33 149.4 388 34.3
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.1e-33 149.4 418 32.1
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.4e-33 149.1 499 32.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.0e-33 146.4 748 27.0
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.2e-32 146.0 741 31.0
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 2.9e-31 141.4 507 31.4
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 5.5e-30 137.1 530 29.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 5.5e-30 137.1 440 29.5
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.7e-29 134.8 514 30.0
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.0e-28 132.9 459 31.2
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.8e-28 132.1 411 32.6
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.1e-27 129.4 390 31.8
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 3.3e-27 127.9 437 30.7
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 3.3e-27 127.9 779 28.4
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 4.8e-26 124.0 406 33.3
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 8.1e-26 123.2 439 31.9
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.8e-25 122.1 468 32.3
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 6.9e-25 120.2 396 31.1
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.0e-24 118.6 409 30.8
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 7.6e-24 116.7 390 31.3
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.0e-23 116.3 736 27.3
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.0e-23 116.3 442 32.1
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 4.9e-23 114.0 389 28.5
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.1e-22 112.8 509 27.5
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 4.2e-22 110.9 393 29.5
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 4.2e-22 110.9 399 30.3
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.1e-21 108.6 389 28.8
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 2.7e-21 108.2 393 30.5
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.3e-20 105.9 401 31.2
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.8e-20 105.5 397 26.4
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 3.9e-20 104.4 380 29.2
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 5.1e-20 104.0 448 28.6
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.7e-20 103.6 388 29.9
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 1.9e-19 102.1 454 30.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.3e-19 101.3 393 29.0
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.3e-19 101.3 343 30.0
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.4e-19 100.1 388 29.4
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 4.8e-18 97.4 379 29.3
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 4.8e-18 97.4 494 28.3
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.8e-17 95.5 405 29.4
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 2.4e-17 95.1 410 26.6
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.0e-16 92.0 352 30.7
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.6e-16 91.7 401 28.2
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.5e-16 90.9 740 25.8
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.7e-15 89.0 414 28.7
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.7e-15 89.0 390 26.7
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 2.2e-15 88.6 408 27.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.2e-15 88.6 362 29.6
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 6.5e-15 87.0 410 29.0
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 8.5e-15 86.7 366 29.0
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.9e-14 85.5 405 26.4
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.9e-14 85.5 380 30.8
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.9e-14 85.5 330 29.4
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 5.5e-14 84.0 324 29.6
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 7.2e-14 83.6 369 29.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 1.6e-13 82.4 395 31.6
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.6e-13 81.3 428 28.7
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 7.9e-13 80.1 435 26.0
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.0e-12 79.7 393 27.2
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.3e-12 79.3 449 26.7
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.0e-12 78.2 428 27.8
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.0e-12 78.2 367 28.1
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 5.1e-12 77.4 233 31.3
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 8.7e-12 76.6 302 29.5
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-11 76.3 400 27.8
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-11 76.3 400 27.8
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.9e-11 75.5 400 27.2
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.9e-11 75.5 425 26.1
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.9e-11 75.5 408 27.9
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 7.4e-11 73.6 173 33.5
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.4e-11 73.6 206 32.5
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-10 72.8 443 26.9
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.3e-10 72.8 134 39.6
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.2e-10 72.0 424 25.9
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 3.7e-10 71.2 810 24.0
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 6.3e-10 70.5 429 28.9
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 8.2e-10 70.1 111 40.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.8e-09 68.9 412 26.0
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.8e-09 68.9 356 27.8
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 3.1e-09 68.2 798 22.1
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 4.1e-09 67.8 441 26.5
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 6.9e-09 67.0 121 40.5
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.2e-08 66.2 197 32.0
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.5e-08 65.9 402 27.4
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.6e-08 65.1 416 26.4
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.6e-08 65.1 200 32.0
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 4.5e-08 64.3 399 26.1
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 4.5e-08 64.3 96 38.5
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 7.7e-08 63.5 427 24.6
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 7.7e-08 63.5 399 26.6
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.0e-07 63.2 399 26.3
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.0e-07 63.2 197 31.0
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 1.3e-07 62.8 148 33.8
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.3e-07 62.8 364 28.0
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 2.2e-07 62.0 428 26.4
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 2.2e-07 62.0 155 33.5
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.2e-07 62.0 415 24.1
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 2.9e-07 61.6 155 33.5
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 2.9e-07 61.6 131 37.4
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 3.8e-07 61.2 148 33.8
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 8.5e-07 60.1 524 26.3
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-06 59.7 405 24.9
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-06 59.7 524 28.1
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.9e-06 58.9 398 28.4
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 7.2e-06 57.0 405 24.9
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 9.4e-06 56.6 164 31.1
Zm00001eb220700 Zea mays HOM05D036983 ORTHO05D037006 9.4e-06 56.6 67 43.3


User provided reference genes

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