Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 9.4e-278 959.5 474 100.0
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 5.8e-203 711.1 485 72.2
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 7.6e-203 710.7 485 72.0
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 7.6e-203 710.7 481 73.6
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.9e-202 708.8 489 71.0
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 6.4e-202 707.6 489 70.8
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 9.3e-201 703.7 481 73.2
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 2.1e-200 702.6 481 71.7
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 6.0e-200 701.0 489 69.9
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 2.2e-194 682.6 479 70.6
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 3.5e-192 675.2 470 70.0
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 1.0e-191 673.7 486 69.1
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.8e-191 672.9 483 67.5
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 2.1e-189 666.0 469 71.4
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.4e-188 663.3 484 69.0
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 3.1e-188 662.1 485 68.7
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 2.0e-187 659.4 441 73.5
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 6.5e-186 654.4 469 69.5
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 1.9e-185 652.9 474 68.6
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 4.6e-184 648.3 521 65.5
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 7.9e-184 647.5 486 67.3
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 7.9e-184 647.5 486 67.3
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 7.9e-184 647.5 471 68.6
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 1.0e-183 647.1 480 68.5
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.8e-183 646.4 442 74.0
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 5.1e-183 644.8 364 83.0
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 5.1e-183 644.8 442 71.7
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.5e-182 642.5 436 72.7
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.3e-181 640.2 463 68.7
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 2.2e-181 639.4 441 71.9
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.2e-181 639.4 490 68.4
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 8.2e-181 637.5 441 70.7
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 2.0e-179 632.9 441 71.2
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.6e-179 632.5 493 67.7
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 2.6e-179 632.5 394 75.6
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 5.9e-179 631.3 474 66.5
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 7.7e-179 630.9 373 78.0
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.2e-178 629.4 424 72.9
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 2.2e-178 629.4 443 72.5
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 2.2e-178 629.4 418 73.7
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 3.8e-178 628.6 424 72.9
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 3.8e-178 628.6 377 78.8
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 5.0e-178 628.2 474 65.8
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 5.0e-178 628.2 481 67.6
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 1.4e-177 626.7 396 74.5
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 3.2e-177 625.5 446 70.0
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 7.2e-177 624.4 373 78.3
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 1.2e-176 623.6 480 65.2
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 4.6e-176 621.7 442 69.9
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 5.1e-175 618.2 447 68.9
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 2.6e-174 615.9 442 69.2
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 3.3e-174 615.5 393 75.3
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 3.3e-174 615.5 446 68.6
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 5.7e-174 614.8 370 78.4
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 7.4e-174 614.4 473 66.0
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 7.4e-174 614.4 367 80.7
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 9.7e-174 614.0 437 69.8
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 3.7e-173 612.1 447 68.9
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 4.8e-173 611.7 393 74.8
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.8e-172 609.8 486 63.8
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 2.4e-172 609.4 473 65.8
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 6.9e-172 607.8 369 76.7
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 2.0e-171 606.3 386 76.4
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 2.6e-171 605.9 381 76.9
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 5.9e-171 604.7 408 72.5
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 3.8e-170 602.1 472 63.3
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 1.9e-169 599.7 372 76.1
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 2.5e-169 599.4 389 75.1
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 2.5e-169 599.4 483 62.1
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 3.2e-169 599.0 370 77.0
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 4.2e-169 598.6 372 74.2
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 9.4e-169 597.4 424 71.5
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 4.7e-168 595.1 442 69.2
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 4.7e-168 595.1 372 76.6
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 7.9e-168 594.3 474 64.1
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 5.2e-167 591.7 475 64.2
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 1.5e-166 590.1 418 67.9
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 1.7e-165 586.6 450 66.0
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 4.8e-165 585.1 359 78.0
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 8.2e-165 584.3 434 66.4
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 4.1e-164 582.0 378 72.0
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 1.0e-162 577.4 373 74.5
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 3.8e-162 575.5 480 61.7
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 3.2e-161 572.4 412 68.9
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 6.1e-160 568.2 404 70.0
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 5.9e-155 551.6 374 72.2
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 1.0e-154 550.8 400 69.2
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 3.2e-153 545.8 367 73.8
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 7.2e-153 544.7 565 52.7
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 1.2e-152 543.9 374 71.4
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 2.3e-151 539.7 304 80.9
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 2.0e-150 536.6 384 68.5
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 2.6e-150 536.2 384 68.2
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 8.3e-149 531.2 385 67.5
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.4e-148 530.4 348 71.6
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 2.3e-146 523.1 459 60.6
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 9.5e-145 517.7 360 71.7
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 3.6e-144 515.8 360 71.4
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 2.2e-141 506.5 286 82.9
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 3.7e-141 505.8 364 67.0
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.7e-131 473.0 335 66.9
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 7.8e-131 471.5 368 62.2
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 1.4e-127 460.7 437 55.6
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 2.4e-124 449.9 353 61.2
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 4.6e-115 419.1 268 71.6
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.2e-110 404.4 293 62.5
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.7e-106 390.6 320 63.4
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 3.4e-102 376.3 244 73.4
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 1.9e-92 344.0 274 64.2
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 3.5e-91 339.7 374 52.7
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.2e-83 314.7 237 65.0
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 3.7e-72 276.6 330 44.5
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.4e-71 273.9 204 57.8
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.1e-71 273.1 204 57.8
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.2e-70 271.6 204 57.4
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 2.6e-70 270.4 299 45.5
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 7.6e-70 268.9 204 57.4
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 7.7e-54 215.7 210 52.9
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 2.9e-37 160.6 141 62.4
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.4e-34 151.8 98 63.3
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 1.4e-26 125.2 162 45.1
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 1.2e-19 102.1 93 61.3
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 1.2e-14 85.5 83 57.8
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 3.0e-13 80.9 293 23.5
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 3.9e-13 80.5 288 24.7
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 3.9e-13 80.5 272 23.5
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 8.6e-13 79.3 269 22.7
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 1.5e-12 78.6 270 23.3
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 2.5e-12 77.8 298 20.8
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 2.5e-12 77.8 298 20.8
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 7.3e-12 76.3 274 23.4
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 9.5e-12 75.9 298 20.8
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.2e-11 75.5 273 20.9
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 1.2e-11 75.5 296 22.0
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.6e-11 75.1 282 25.2
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.1e-11 74.7 297 22.2
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 2.8e-11 74.3 279 22.9
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 4.7e-11 73.6 298 20.8
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 8.0e-11 72.8 270 21.1
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 3.4e-09 67.4 158 23.4
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 4.4e-09 67.0 272 21.7
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 5.8e-09 66.6 276 21.7
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.3e-08 65.5 269 21.2
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.3e-08 65.5 160 21.9


User provided reference genes

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