Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 5.1e-81 304.3 146 100.0
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 2.4e-67 258.8 146 84.9
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 1.2e-66 256.5 148 83.1
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 1.2e-66 256.5 148 83.8
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.8e-66 253.8 146 84.2
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.0e-65 253.4 146 83.6
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.3e-65 253.1 146 82.9
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.7e-65 252.7 146 82.2
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.0e-65 251.9 146 82.9
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 3.0e-65 251.9 147 82.3
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 3.0e-65 251.9 146 82.9
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.6e-65 250.8 147 82.3
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 8.7e-65 250.4 146 82.9
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.9e-64 249.2 146 81.5
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 2.5e-64 248.8 147 82.3
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 3.3e-64 248.4 146 80.8
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 4.3e-64 248.1 146 82.9
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 4.3e-64 248.1 146 82.9
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 5.6e-64 247.7 147 81.0
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 5.6e-64 247.7 147 81.6
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 7.3e-64 247.3 146 80.8
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 7.3e-64 247.3 144 82.6
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 9.6e-64 246.9 145 81.4
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.3e-63 246.5 146 78.8
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 3.6e-63 245.0 150 80.7
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 4.8e-63 244.6 147 81.0
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 8.1e-63 243.8 147 81.6
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 8.1e-63 243.8 147 79.6
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.1e-62 243.4 146 79.5
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.1e-62 243.4 147 81.0
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.4e-62 243.0 150 78.0
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.4e-62 243.0 147 81.0
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 1.8e-62 242.7 142 82.4
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.8e-62 242.7 145 80.7
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 1.8e-62 242.7 147 81.0
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 2.4e-62 242.3 148 81.1
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 2.4e-62 242.3 147 80.3
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 5.3e-62 241.1 146 78.8
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 6.9e-62 240.7 145 80.7
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 1.2e-61 240.0 147 78.2
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.2e-61 240.0 147 79.6
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.5e-61 239.6 146 78.8
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.5e-61 239.6 144 77.8
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 2.0e-61 239.2 142 81.0
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 2.0e-61 239.2 146 78.1
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 2.6e-61 238.8 148 79.7
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 3.4e-61 238.4 148 79.1
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 4.5e-61 238.0 147 78.9
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 4.5e-61 238.0 148 77.7
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 4.5e-61 238.0 148 80.4
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 4.5e-61 238.0 146 77.4
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 5.8e-61 237.7 146 76.7
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 5.8e-61 237.7 149 79.9
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 5.8e-61 237.7 148 78.4
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 5.8e-61 237.7 148 78.4
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 9.9e-61 236.9 148 79.7
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.3e-60 236.5 145 77.2
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 2.2e-60 235.7 146 76.7
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 2.9e-60 235.3 149 77.2
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 2.9e-60 235.3 146 79.5
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 4.9e-60 234.6 142 77.5
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.9e-60 234.6 154 76.0
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 6.4e-60 234.2 146 78.1
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 6.4e-60 234.2 146 76.0
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 8.4e-60 233.8 146 75.3
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.1e-59 233.4 146 78.8
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 1.1e-59 233.4 132 82.6
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.1e-59 233.4 150 77.3
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.4e-59 233.0 146 78.1
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 1.4e-59 233.0 149 76.5
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.4e-59 233.0 146 75.3
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.9e-59 232.6 125 84.8
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.9e-59 232.6 146 76.0
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 3.2e-59 231.9 154 74.7
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 4.2e-59 231.5 147 76.9
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 5.4e-59 231.1 146 78.1
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 5.4e-59 231.1 146 78.1
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 5.4e-59 231.1 163 71.8
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 5.4e-59 231.1 136 79.4
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 7.1e-59 230.7 146 77.4
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 7.1e-59 230.7 142 76.1
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 9.3e-59 230.3 131 83.2
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 1.2e-58 229.9 146 78.8
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.7e-58 228.8 135 79.3
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.0e-57 226.9 138 77.5
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.0e-57 226.9 138 77.5
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 1.0e-57 226.9 159 69.2
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.3e-57 226.5 138 77.5
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 1.8e-57 226.1 142 76.8
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 5.1e-57 224.6 152 74.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 5.1e-57 224.6 146 74.7
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 8.7e-57 223.8 133 78.9
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 1.1e-56 223.4 149 76.5
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 1.9e-56 222.6 118 83.9
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 2.5e-56 222.2 145 72.4
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 3.3e-56 221.9 132 78.8
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 4.3e-56 221.5 138 76.8
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.3e-55 219.9 175 63.4
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.3e-55 219.9 175 63.4
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 1.4e-54 216.5 146 71.2
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 1.4e-54 216.5 131 77.9
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 2.0e-53 212.6 150 70.0
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 5.8e-53 211.1 118 82.2
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 7.6e-53 210.7 136 76.5
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 1.1e-51 206.8 132 75.0
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.4e-51 206.5 131 73.3
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 1.4e-51 206.5 143 67.1
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 2.4e-51 205.7 112 80.4
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 4.2e-51 204.9 124 75.0
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 9.3e-51 203.8 122 73.0
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 2.7e-50 202.2 153 68.6
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 7.9e-50 200.7 149 64.4
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.0e-49 200.3 105 85.7
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.8e-49 199.5 171 60.8
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 1.6e-47 193.0 152 67.1
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 4.8e-47 191.4 135 65.2
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.1e-46 188.7 104 78.8
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 9.0e-46 187.2 104 77.9
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 9.0e-46 187.2 111 82.0
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.5e-45 186.4 147 66.7
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.4e-44 180.6 151 64.9
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 3.2e-43 178.7 91 82.4
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 4.2e-43 178.3 116 75.9
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 5.5e-43 177.9 112 77.7
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 2.8e-39 165.6 152 60.5
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 2.4e-38 162.5 89 84.3
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.2e-37 160.2 111 72.1
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.3e-36 156.8 100 80.0
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.3e-36 156.8 78 84.6
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.2e-28 129.4 86 77.9
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 1.6e-26 123.2 61 85.2
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.6e-26 123.2 104 57.7
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.9e-25 118.6 141 44.7
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 3.4e-21 105.5 62 71.0
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 9.4e-19 97.4 52 82.7
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 6.7e-17 91.3 308 27.3
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 2.6e-16 89.4 64 70.3
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 7.4e-16 87.8 74 70.3
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.2e-15 86.3 52 71.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.5e-11 72.8 38 89.5
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.6e-10 70.1 40 72.5
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.7e-10 69.3 49 65.3
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.8e-09 66.6 42 71.4
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 4.8e-07 58.5 30 73.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 4.8e-07 58.5 46 65.2


User provided reference genes

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