Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 1.1e-77 293.5 173 100.0
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.5e-63 246.5 173 73.4
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.9e-63 246.1 173 72.8
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 6.9e-61 237.7 173 72.3
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.0e-60 236.1 178 75.3
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 6.5e-59 231.1 123 89.4
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 8.4e-59 230.7 173 76.9
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.4e-58 229.9 123 88.6
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.4e-58 229.9 174 78.2
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 4.2e-58 228.4 173 75.1
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 5.5e-58 228.0 124 87.9
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 7.1e-58 227.6 124 87.9
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 9.3e-58 227.3 136 83.1
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.2e-57 226.9 137 82.5
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 2.1e-57 226.1 123 87.0
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 2.7e-57 225.7 123 87.0
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 4.6e-57 224.9 123 87.0
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 4.6e-57 224.9 123 86.2
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 5.1e-56 221.5 123 86.2
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 6.7e-56 221.1 122 86.1
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 6.7e-56 221.1 122 86.1
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 8.7e-56 220.7 123 86.2
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.1e-55 220.3 123 87.8
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.5e-55 219.9 174 73.0
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.5e-55 219.9 123 84.6
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 1.9e-55 219.5 122 86.9
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.9e-55 219.5 122 86.1
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 2.5e-55 219.2 174 71.3
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.3e-55 218.8 122 85.2
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 5.7e-55 218.0 122 83.6
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 7.4e-55 217.6 123 87.0
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 9.6e-55 217.2 123 87.8
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 1.3e-54 216.9 123 85.4
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.6e-54 216.5 174 70.7
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 2.1e-54 216.1 123 87.0
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 2.8e-54 215.7 124 84.7
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 4.8e-54 214.9 123 87.0
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 4.8e-54 214.9 122 85.2
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 6.2e-54 214.5 124 85.5
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.4e-53 213.4 123 83.7
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.4e-53 213.4 180 70.0
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 1.8e-53 213.0 123 84.6
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.8e-53 213.0 122 85.2
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.4e-53 212.6 123 85.4
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.1e-53 212.2 173 69.9
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.1e-53 212.2 173 69.9
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 4.1e-53 211.8 123 85.4
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 5.3e-53 211.5 124 84.7
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.2e-52 210.3 125 84.0
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 1.2e-52 210.3 122 83.6
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.2e-52 210.3 123 84.6
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.5e-52 209.9 123 84.6
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 2.0e-52 209.5 123 82.9
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 2.6e-52 209.1 123 83.7
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 2.6e-52 209.1 123 83.7
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 2.6e-52 209.1 123 83.7
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 2.6e-52 209.1 123 83.7
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 5.8e-52 208.0 124 82.3
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.0e-51 207.2 124 83.1
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 1.7e-51 206.5 122 82.8
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.7e-51 206.5 123 81.3
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 2.9e-51 205.7 123 81.3
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 5.0e-51 204.9 123 83.7
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 5.0e-51 204.9 122 82.8
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 6.5e-51 204.5 121 82.6
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 6.5e-51 204.5 122 82.0
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 8.4e-51 204.1 121 80.2
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 8.4e-51 204.1 122 81.1
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.1e-50 203.8 124 81.5
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 2.5e-50 202.6 121 78.5
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.2e-50 202.2 123 81.3
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 4.2e-50 201.8 118 84.7
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 4.2e-50 201.8 122 80.3
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.2e-50 201.8 122 80.3
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 4.2e-50 201.8 124 81.5
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 7.1e-50 201.1 121 78.5
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 7.1e-50 201.1 121 81.8
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 9.3e-50 200.7 122 80.3
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 9.3e-50 200.7 124 80.6
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.2e-49 200.3 123 80.5
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-49 200.3 122 79.5
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.2e-49 200.3 124 80.6
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.2e-49 200.3 119 81.5
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 1.6e-49 199.9 122 76.2
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.6e-49 199.9 122 76.2
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.6e-49 199.9 122 76.2
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.6e-49 199.9 122 76.2
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.6e-49 199.9 116 86.2
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 1.6e-49 199.9 121 78.5
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.6e-49 199.9 123 81.3
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.6e-49 199.9 122 76.2
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 3.5e-49 198.7 122 77.0
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.5e-49 198.7 122 80.3
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.5e-49 198.7 122 80.3
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 3.5e-49 198.7 122 80.3
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 4.6e-49 198.4 121 81.8
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 4.6e-49 198.4 121 80.2
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 7.9e-49 197.6 122 74.6
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 1.3e-48 196.8 123 76.4
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 3.0e-48 195.7 123 78.9
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 3.0e-48 195.7 119 78.2
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 5.1e-48 194.9 120 77.5
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 5.1e-48 194.9 124 77.4
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 5.1e-48 194.9 132 76.5
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 6.7e-48 194.5 133 74.4
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.5e-47 192.6 119 77.3
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.3e-47 192.2 145 71.7
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 9.7e-47 190.7 114 80.7
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.3e-46 190.3 121 74.4
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.8e-46 189.1 117 78.6
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 4.8e-46 188.3 113 80.5
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 8.2e-46 187.6 120 75.0
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.4e-45 186.0 106 84.9
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 3.1e-45 185.7 105 85.7
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 6.9e-45 184.5 119 76.5
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 6.9e-45 184.5 113 79.6
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 1.2e-44 183.7 122 76.2
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.5e-44 183.3 123 75.6
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.6e-44 182.6 105 83.8
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.6e-44 182.6 179 59.2
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 4.5e-44 181.8 122 72.1
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.7e-43 179.9 152 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.9e-43 179.1 111 76.6
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.9e-43 179.1 121 71.9
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.9e-43 179.1 120 74.2
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 6.5e-43 177.9 105 84.8
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.5e-43 177.6 122 74.6
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 1.4e-42 176.8 155 60.6
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.2e-41 173.7 123 74.0
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 6.1e-41 171.4 110 74.5
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.4e-40 170.2 121 71.1
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 1.8e-40 169.9 123 72.4
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.1e-39 167.2 124 70.2
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.1e-39 167.2 123 69.1
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 9.7e-39 164.1 118 64.4
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 1.7e-38 163.3 86 88.4
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 4.8e-38 161.8 102 73.5
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 3.1e-37 159.1 112 72.3
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.9e-37 157.9 122 67.2
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.9e-37 157.9 122 67.2
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.9e-37 157.9 122 67.2
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 2.0e-36 156.4 95 76.8
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 7.7e-36 154.5 91 82.4
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 2.2e-35 152.9 119 63.0
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 6.5e-35 151.4 86 81.4
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 2.5e-34 149.4 128 64.1
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 7.4e-31 137.9 107 67.3
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 8.2e-30 134.4 76 86.8
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 2.6e-28 129.4 133 54.1
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 8.8e-24 114.4 58 93.1
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.5e-23 113.6 64 82.8
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 6.3e-22 108.2 55 85.5
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 5.3e-21 105.1 50 94.0
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 3.5e-20 102.4 74 74.3
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 4.5e-20 102.1 96 61.5
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 4.5e-20 102.1 120 45.0
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 5.9e-20 101.7 58 86.2
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 7.2e-18 94.7 75 60.0
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 6.1e-17 91.7 75 58.7
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 8.0e-17 91.3 75 58.7
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 5.7e-15 85.1 47 83.0
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 3.5e-12 75.9 136 35.3
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 7.7e-12 74.7 113 40.7
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 2.1e-09 66.6 151 31.8
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 4.7e-09 65.5 39 74.4


User provided reference genes

Program Settings