Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 0.0e+00 1081.6 540 100.0
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.0e-304 1049.3 524 99.2
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 1.5e-303 1045.4 524 98.9
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 1.5e-303 1045.4 524 98.9
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 1.5e-303 1045.4 524 98.9
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 1.5e-303 1045.4 524 98.9
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.5e-303 1045.4 524 98.9
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.8e-293 1011.9 524 96.6
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.9e-291 1004.6 524 95.8
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 5.0e-291 1003.8 522 96.7
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 4.6e-289 997.3 524 95.8
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 2.5e-287 991.5 523 95.8
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 1.5e-284 982.2 495 98.4
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-283 979.2 524 94.5
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-283 979.2 524 94.5
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-283 979.2 524 94.5
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 5.0e-283 977.2 523 94.5
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.4e-282 975.7 524 94.5
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 3.2e-282 974.5 524 94.5
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 3.2e-282 974.5 524 94.5
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 3.9e-280 967.6 524 93.9
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 7.4e-279 963.4 495 97.6
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 1.4e-277 959.1 524 92.6
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.1e-277 956.4 495 96.8
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.1e-277 956.4 495 96.8
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.1e-277 956.4 495 96.8
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.3e-272 941.8 524 91.2
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.7e-267 925.6 493 94.9
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 9.1e-261 903.3 524 88.9
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.7e-257 891.7 479 93.1
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 8.8e-256 886.7 517 89.4
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.5e-255 885.9 522 87.2
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 2.8e-254 881.7 495 91.7
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.8e-251 871.3 524 84.5
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.9e-250 869.0 453 96.2
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.8e-245 852.4 508 87.8
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.2e-244 849.7 503 88.3
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 5.6e-242 840.9 522 84.7
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 8.0e-241 837.0 421 99.5
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 3.0e-240 835.1 420 99.5
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.7e-235 819.3 508 84.3
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 2.1e-233 812.4 485 87.4
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 7.8e-228 793.9 453 90.1
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 6.4e-222 774.2 388 99.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 3.8e-214 748.4 448 87.1
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 2.4e-213 745.7 485 82.1
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 7.1e-213 744.2 451 86.3
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-198 696.8 458 80.6
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.6e-185 653.3 351 93.7
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.2e-182 642.9 453 75.9
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 7.4e-178 627.9 455 75.6
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 3.1e-168 595.9 439 73.6
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 6.9e-168 594.7 522 63.4
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-167 593.6 314 93.6
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.2e-159 567.4 284 97.5
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.3e-158 563.9 297 97.3
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 8.0e-156 554.7 284 96.1
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.3e-155 553.1 351 81.2
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 2.0e-151 540.0 314 86.9
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 5.5e-141 505.4 365 74.5
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 2.0e-138 496.9 662 47.7
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 4.8e-137 492.3 250 96.8
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.1e-136 491.1 250 96.0
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.5e-133 480.7 274 88.0
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.5e-133 480.7 274 88.0
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 9.5e-133 478.0 250 94.8
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-131 474.2 265 92.1
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 6.8e-131 471.9 250 94.0
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 3.5e-127 459.5 242 96.3
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 3.4e-122 443.0 261 87.7
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 3.5e-119 433.0 227 97.4
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 8.9e-115 418.3 307 73.3
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.2e-114 417.9 524 50.8
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.1e-112 411.4 235 87.7
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 4.6e-111 406.0 432 53.0
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.7e-105 386.3 312 70.8
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 4.9e-105 386.0 222 91.9
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 2.4e-104 383.6 204 95.6
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 4.7e-100 369.4 185 96.2
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.1e-96 358.2 504 45.0
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 7.1e-96 355.5 185 94.6
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 7.1e-96 355.5 185 94.6
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 7.1e-96 355.5 185 94.6
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 3.3e-93 346.7 185 91.9
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.6e-93 345.9 348 59.5
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.6e-92 344.4 262 76.3
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.3e-89 334.7 427 52.7
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-86 324.7 328 56.4
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-83 314.7 321 56.7
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.6e-82 310.5 386 42.7
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 7.6e-82 308.9 161 96.3
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-81 306.6 197 79.2
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.2e-73 280.8 159 89.9
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.8e-67 261.2 434 44.5
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 6.7e-62 242.7 244 57.8
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 2.5e-61 240.7 186 69.4
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 8.2e-60 235.7 283 51.2
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 4.1e-59 233.4 231 60.6
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 8.5e-57 225.7 118 96.6
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.1e-56 225.3 134 77.6
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 2.5e-56 224.2 175 68.0
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 7.2e-56 222.6 241 56.4
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.8e-54 218.0 128 85.2
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.3e-52 211.8 148 77.7
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 2.8e-52 210.7 138 81.9
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 8.2e-52 209.1 101 96.0
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 6.9e-51 206.1 105 92.4
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 6.9e-51 206.1 105 92.4
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 9.1e-51 205.7 137 81.0
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 7.9e-47 192.6 100 95.0
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 3.9e-46 190.3 227 51.1
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.7e-44 184.9 109 82.6
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 4.1e-43 180.3 87 95.4
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 2.6e-42 177.6 91 92.3
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.3e-41 175.3 90 92.2
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.2e-41 174.5 91 93.4
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 6.5e-41 172.9 153 66.0
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 9.4e-40 169.1 93 86.0
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-39 168.7 91 89.0
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 2.1e-39 167.9 95 91.6
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 8.0e-39 166.0 197 50.8
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-38 165.6 91 92.3
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.3e-38 164.5 156 60.9
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-38 163.7 165 58.8
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.9e-38 163.7 104 78.8
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-34 152.1 92 81.5
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.6e-34 151.8 124 64.5
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 1.6e-34 151.8 163 59.5
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 4.5e-34 150.2 81 90.1
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 1.0e-33 149.1 87 81.6
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 2.5e-32 144.4 106 71.7
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 5.3e-27 126.7 112 66.1
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 9.1e-27 125.9 80 78.8
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 2.0e-26 124.8 129 58.9
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 5.5e-24 116.7 56 96.4
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.7e-23 113.6 92 72.8
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.0e-23 112.8 76 73.7
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 1.4e-22 112.1 64 84.4
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 8.8e-22 109.4 70 78.6
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 7.5e-21 106.3 73 69.9
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.7e-20 104.0 68 79.4
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-19 100.9 53 86.8
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 1.2e-18 99.0 70 74.3
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 2.3e-17 94.7 47 97.9
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 8.6e-17 92.8 46 91.3
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 2.1e-15 88.2 50 84.0
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 5.2e-14 83.6 50 80.0
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 6.8e-14 83.2 48 87.5
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 1.5e-13 82.0 41 95.1
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.5e-13 79.7 42 88.1
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 2.8e-12 77.8 56 71.4
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.2e-11 74.3 50 78.0
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 9.2e-11 72.8 33 97.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.2e-10 72.4 36 91.7
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 5.9e-10 70.1 35 88.6
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.3e-09 68.9 34 94.1
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.3e-09 68.2 61 60.7
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 5.0e-09 67.0 46 73.9


User provided reference genes

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