Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 5.3e-248 860.5 421 100.0
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 9.0e-240 833.2 421 97.4
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 2.9e-198 695.3 421 80.5
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 7.2e-197 690.6 421 79.3
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 1.3e-193 679.9 421 79.3
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 4.9e-193 677.9 421 78.1
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 2.9e-190 668.7 421 76.5
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 6.6e-190 667.5 421 78.1
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.5e-189 665.6 421 77.9
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 5.6e-189 664.5 405 79.0
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 9.5e-189 663.7 421 77.4
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.6e-188 662.9 421 75.3
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 2.8e-188 662.1 421 75.3
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.8e-188 662.1 421 77.7
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.4e-187 659.8 421 77.0
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.8e-187 659.4 421 74.8
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 4.0e-187 658.3 421 77.0
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 4.0e-187 658.3 420 76.4
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 2.6e-186 655.6 421 76.0
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.4e-186 655.2 421 73.9
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 4.4e-186 654.8 421 75.3
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.4e-186 654.8 421 73.9
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 9.8e-186 653.7 421 75.3
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.3e-185 653.3 421 74.1
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 1.7e-185 652.9 421 74.8
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 6.4e-185 651.0 421 73.4
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 7.8e-183 644.0 421 73.9
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.0e-182 642.1 421 73.9
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.0e-182 642.1 421 74.1
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 1.1e-181 640.2 421 73.9
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 1.5e-181 639.8 421 73.9
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 1.5e-181 639.8 421 73.4
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.3e-181 638.6 421 72.7
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 4.3e-181 638.3 421 73.2
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 7.3e-181 637.5 421 72.9
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 9.5e-181 637.1 421 74.1
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.2e-180 636.7 421 72.7
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 2.1e-180 636.0 421 73.4
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 2.8e-180 635.6 421 73.2
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 4.7e-180 634.8 421 73.2
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 5.2e-179 631.3 421 71.5
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 8.9e-179 630.6 421 72.9
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 8.9e-179 630.6 421 72.9
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.0e-178 629.4 421 71.7
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 7.5e-178 627.5 421 72.0
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 4.1e-176 621.7 421 70.3
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 9.2e-176 620.5 416 71.2
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.6e-175 619.8 421 70.5
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.0e-175 619.4 421 71.3
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.3e-174 616.7 421 72.2
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 1.7e-174 616.3 421 71.7
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 2.3e-174 615.9 421 72.4
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 3.9e-174 615.1 426 70.0
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 6.6e-174 614.4 421 69.4
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 9.5e-173 610.5 422 70.6
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 3.6e-172 608.6 421 69.8
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 8.1e-172 607.4 421 69.6
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.1e-171 607.1 420 69.5
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 2.3e-171 605.9 421 69.1
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 4.0e-171 605.1 421 70.5
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.9e-171 604.0 421 69.4
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 1.2e-170 603.6 422 70.1
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.5e-170 603.2 421 71.5
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 2.0e-170 602.8 421 70.3
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 3.4e-170 602.1 421 69.6
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 5.8e-170 601.3 424 69.3
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 2.9e-169 599.0 422 69.9
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 3.7e-169 598.6 421 68.2
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.1e-168 597.0 421 68.4
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.4e-168 595.9 422 68.0
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 4.1e-168 595.1 426 69.5
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 6.0e-167 591.3 422 69.0
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.0e-166 590.5 426 68.1
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.0e-166 590.5 421 68.6
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.3e-166 590.1 421 69.1
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.3e-166 590.1 424 69.8
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.3e-166 589.3 426 67.8
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 8.6e-166 587.4 408 69.4
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.5e-165 586.6 421 66.7
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.6e-164 582.0 421 66.5
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 8.1e-164 580.9 421 67.9
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.4e-163 579.3 421 66.7
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.4e-162 575.5 409 69.9
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 9.9e-162 573.9 423 66.2
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 9.9e-162 573.9 425 67.5
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.7e-161 573.2 421 67.0
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.1e-160 570.5 421 65.8
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.1e-160 570.5 422 67.1
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 5.4e-160 568.2 421 67.2
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 7.1e-160 567.8 421 65.6
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 2.7e-159 565.8 421 65.3
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 7.8e-159 564.3 421 65.3
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 3.0e-158 562.4 421 65.3
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 3.9e-158 562.0 421 65.6
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 1.1e-157 560.5 421 65.8
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.1e-156 556.2 422 66.6
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 2.8e-156 555.8 421 64.6
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 3.1e-155 552.4 421 64.8
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 9.0e-155 550.8 422 63.0
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 2.0e-154 549.7 421 63.4
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 3.4e-154 548.9 421 63.4
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 2.2e-153 546.2 421 62.7
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 2.2e-153 546.2 421 62.7
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 8.4e-153 544.3 421 62.2
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 6.0e-151 538.1 422 64.0
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.0e-150 537.3 422 64.2
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 5.1e-150 535.0 423 64.3
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.0e-146 523.1 422 64.5
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 1.6e-143 513.5 421 59.9
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.5e-143 512.3 378 65.1
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.3e-140 503.8 421 59.1
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.3e-134 483.8 422 56.2
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 6.7e-134 481.5 426 58.5
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 2.8e-132 476.1 357 66.9
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 6.9e-123 444.9 406 53.7
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 1.2e-122 444.1 426 52.1
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 2.5e-117 426.4 426 50.9
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 1.7e-113 413.7 250 80.0
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 2.1e-111 406.8 278 69.8
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.4e-110 404.1 324 62.7
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 5.1e-110 402.1 420 48.1
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 6.5e-105 385.2 423 48.0
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.9e-88 330.5 360 46.9
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 6.1e-87 325.5 303 56.4
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 3.0e-86 323.2 413 44.8
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.7e-84 317.4 301 54.8
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 8.0e-79 298.5 249 58.6
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.9e-72 277.3 317 43.8
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.0e-66 255.8 266 51.9
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 2.1e-63 247.3 135 83.7
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 2.4e-46 190.7 171 58.5
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 1.9e-43 181.0 130 68.5
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-38 165.2 99 77.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 9.3e-35 152.1 88 79.5
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.8e-29 132.9 74 81.1
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-28 131.7 71 83.1
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 4.2e-27 126.7 71 81.7
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 6.0e-26 122.9 71 80.3
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.0e-26 122.9 71 80.3
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.1e-19 102.1 100 56.0
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.1e-19 102.1 106 50.9
SMO111G0157 Selaginella moellendorffii HOM05D019739 ORTHO05D026044 2.5e-11 74.3 424 24.1
Peaxi162Scf00450g00852 Petunia axillaris HOM05D000051 ORTHO05D000015 2.7e-10 70.9 288 26.4
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 2.7e-10 70.9 314 26.1
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 3.5e-10 70.5 85 50.6
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 6.0e-10 69.7 321 25.9
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 7.9e-10 69.3 245 26.5
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 1.3e-09 68.6 314 25.8
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 3.0e-09 67.4 306 25.2
FAN05G2045 Fragaria x ananassa HOM05D003488 ORTHO05D004214 3.9e-09 67.0 314 25.5
Solyc07g064260.2 Solanum lycopersicum HOM05D000051 ORTHO05D000015 1.1e-08 65.5 258 27.5
Sopen07g032410 Solanum pennellii HOM05D000051 ORTHO05D000015 1.1e-08 65.5 258 27.5
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 3.3e-08 63.9 313 25.9
CAN.G337.100 Capsicum annuum HOM05D000051 ORTHO05D000015 1.3e-07 62.0 259 27.4
A01p29550 Brassica napus HOM05D000689 ORTHO05D000015 2.2e-07 61.2 243 25.9
BraA01t03089Z Brassica rapa HOM05D000689 ORTHO05D000015 2.2e-07 61.2 243 25.9
CsaV3_3G044070 Cucumis sativus L. HOM05D001477 ORTHO05D001182 2.8e-07 60.8 217 24.9
PGSC0003DMG401001040 Solanum tuberosum HOM05D000051 ORTHO05D000015 4.8e-07 60.1 246 26.8
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 2.4e-06 57.8 326 24.5


User provided reference genes

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