Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 0.0e+00 1300.4 662 100.0
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 5.0e-277 957.6 659 75.1
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 4.2e-276 954.5 675 72.9
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 8.0e-275 950.3 664 74.1
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 1.4e-274 949.5 662 73.3
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 7.5e-273 943.7 653 74.1
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 2.6e-265 918.7 665 70.2
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 8.3e-264 913.7 668 71.1
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 8.3e-264 913.7 660 71.7
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 7.0e-263 910.6 659 71.5
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 9.1e-263 910.2 660 71.5
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 2.7e-262 908.7 662 71.5
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 5.9e-262 907.5 661 70.7
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 3.0e-258 895.2 668 68.9
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 2.0e-257 892.5 664 69.3
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 9.2e-255 883.6 670 69.3
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 2.3e-253 879.0 669 68.5
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.5e-252 876.3 668 68.0
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 2.5e-252 875.5 668 68.0
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 3.6e-251 871.7 663 68.2
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 6.1e-251 870.9 636 71.1
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 5.2e-250 867.8 668 65.9
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 4.4e-249 864.8 681 66.8
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 4.4e-249 864.8 681 66.8
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 6.4e-248 860.9 661 67.8
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 6.0e-246 854.4 668 67.1
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 6.0e-246 854.4 661 67.6
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 7.8e-246 854.0 666 67.3
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 6.6e-245 850.9 918 53.2
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.9e-244 849.4 673 65.7
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.5e-244 849.0 673 65.8
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 3.6e-243 845.1 660 67.3
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 4.7e-243 844.7 668 65.3
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 4.7e-243 844.7 660 67.0
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 5.8e-241 837.8 660 66.4
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 2.4e-239 832.4 662 66.5
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 1.2e-238 830.1 661 66.0
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 6.0e-238 827.8 664 65.5
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.0e-237 827.0 693 64.5
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 1.9e-236 822.8 661 65.4
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 4.3e-236 821.6 662 65.0
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 5.6e-236 821.2 672 63.7
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 2.3e-234 815.8 664 64.8
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 3.1e-234 815.5 669 63.1
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 4.0e-234 815.1 674 64.4
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 1.2e-233 813.5 763 59.9
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 1.9e-231 806.2 675 64.3
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.5e-230 802.0 670 63.3
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 4.6e-230 801.6 663 63.3
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 6.0e-230 801.2 669 62.8
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 6.0e-230 801.2 666 64.1
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.7e-229 799.7 668 63.6
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 5.1e-229 798.1 663 63.2
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 5.1e-229 798.1 664 62.8
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 6.6e-229 797.7 666 63.7
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 8.6e-229 797.3 673 63.0
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 8.6e-229 797.3 664 63.0
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 8.6e-229 797.3 632 65.8
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 5.6e-228 794.7 667 62.2
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 3.1e-226 788.9 655 63.2
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 2.0e-225 786.2 660 61.8
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 4.4e-225 785.0 657 63.0
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 1.2e-222 776.9 658 62.3
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 3.5e-222 775.4 669 61.9
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 3.5e-222 775.4 587 68.8
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 6.0e-222 774.6 663 61.7
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 1.1e-220 770.4 668 62.1
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 4.3e-220 768.5 673 60.8
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 2.8e-219 765.8 671 61.1
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 8.4e-216 754.2 670 60.6
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 2.7e-214 749.2 637 62.0
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 3.3e-212 742.3 675 59.4
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 2.1e-211 739.6 648 60.3
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 6.9e-210 734.6 748 54.7
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 4.5e-209 731.9 666 60.5
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 1.3e-208 730.3 665 60.5
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 1.7e-208 729.9 664 59.8
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 2.2e-208 729.6 664 59.3
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 2.2e-208 729.6 641 60.2
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 6.4e-208 728.0 662 59.4
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 1.1e-207 727.2 662 59.1
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 3.5e-206 722.2 663 58.4
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 4.6e-206 721.8 664 59.2
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 6.7e-205 718.0 662 57.6
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 2.5e-204 716.1 665 57.4
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 7.4e-204 714.5 666 58.6
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 3.7e-203 712.2 664 58.4
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 3.7e-203 712.2 659 58.4
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 6.2e-203 711.4 661 57.9
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.1e-202 709.1 656 58.2
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.8e-200 702.2 655 58.5
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 8.4e-200 701.0 686 59.2
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 1.5e-196 690.3 669 55.6
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 7.1e-191 671.4 680 55.3
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 6.0e-190 668.3 656 55.9
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 6.3e-187 658.3 673 53.3
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 7.4e-180 634.8 627 54.5
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 4.1e-170 602.4 669 49.9
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 9.1e-170 601.3 493 63.9
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.8e-157 560.5 561 53.3
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 4.0e-157 559.3 662 46.8
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 6.8e-157 558.5 715 44.5
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 9.4e-151 538.1 656 47.9
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 9.1e-146 521.5 526 54.4
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 5.6e-127 459.1 542 48.9
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 4.2e-106 389.8 296 68.9
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 4.6e-97 359.8 713 35.5
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 1.3e-96 358.2 378 54.5
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.5e-87 328.2 667 33.9
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 1.5e-87 328.2 541 40.3
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 3.1e-85 320.5 650 31.1
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 9.4e-66 255.8 164 81.1
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 2.1e-49 201.4 476 30.5
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 5.2e-48 196.8 135 74.8
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.0e-47 194.9 365 37.5
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 5.5e-42 176.8 136 68.4
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 1.6e-41 175.3 182 54.4
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 5.7e-31 140.2 100 73.0
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 8.3e-30 136.3 175 52.0
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 5.4e-29 133.7 255 35.7
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 3.9e-19 100.9 58 75.9
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 3.9e-19 100.9 170 38.2
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.0e-16 92.8 119 49.6
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 3.2e-13 81.3 87 46.0
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 9.2e-13 79.7 49 75.5
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 2.0e-12 78.6 70 60.0
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 2.8e-09 68.2 65 52.3
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.8e-08 65.5 37 89.2
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 8.9e-08 63.2 37 86.5
Pp3c19_8370 Physcomitrium patens HOM05D005966 ORTHO05D007584 2.0e-07 62.0 130 34.6
AUR62041250 Chenopodium quinoa HOM05D005966 ORTHO05D007584 2.2e-06 58.5 50 66.0


User provided reference genes

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