Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 4.7e-189 664.5 357 100.0
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 3.3e-142 508.8 362 76.8
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 6.9e-140 501.1 362 77.3
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 4.9e-138 495.0 369 74.0
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 9.3e-137 490.7 363 74.7
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 3.5e-136 488.8 367 75.2
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 1.8e-135 486.5 367 75.7
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 3.3e-134 482.3 363 72.7
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 1.1e-132 477.2 362 72.7
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 2.4e-132 476.1 362 73.2
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 3.1e-132 475.7 361 73.1
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 4.1e-132 475.3 363 72.2
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 5.3e-132 474.9 330 78.5
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 2.0e-131 473.0 364 73.1
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 2.6e-131 472.6 362 72.1
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 4.5e-131 471.9 362 74.9
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 1.0e-130 470.7 362 74.6
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.9e-129 466.5 382 69.4
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 2.5e-129 466.1 363 72.7
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 4.2e-129 465.3 365 69.3
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 4.2e-129 465.3 359 73.3
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 5.5e-129 464.9 363 73.8
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 7.2e-129 464.5 389 68.9
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 7.2e-129 464.5 361 72.6
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 9.3e-129 464.2 364 72.0
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 1.2e-128 463.8 363 72.5
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 1.2e-128 463.8 389 68.9
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 1.6e-128 463.4 323 78.6
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 2.1e-128 463.0 363 73.6
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 2.1e-128 463.0 357 72.5
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 2.3e-127 459.5 312 79.8
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 3.9e-127 458.8 363 72.5
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 6.7e-127 458.0 348 74.7
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 1.1e-126 457.2 362 71.3
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 1.9e-126 456.4 359 72.7
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 4.3e-126 455.3 363 71.6
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 5.7e-126 454.9 352 70.2
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 9.7e-126 454.1 357 72.0
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.3e-125 453.8 330 75.2
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 3.7e-125 452.2 357 72.0
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 1.4e-124 450.3 317 76.0
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.8e-124 449.9 295 80.3
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 2.4e-124 449.5 361 70.6
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 6.9e-124 448.0 260 89.2
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 9.1e-124 447.6 296 81.4
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 7.7e-123 444.5 328 73.5
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 1.0e-122 444.1 358 71.2
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 2.2e-122 443.0 311 77.2
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 1.1e-121 440.7 375 68.8
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 7.2e-121 438.0 264 87.9
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.7e-120 436.0 364 67.6
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 6.1e-120 434.9 265 86.8
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 6.1e-120 434.9 344 70.3
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 1.0e-119 434.1 355 69.0
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 1.8e-119 433.3 301 77.7
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.8e-119 433.3 335 72.5
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 3.0e-119 432.6 363 68.0
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 3.0e-119 432.6 287 79.8
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 3.9e-119 432.2 302 78.8
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 3.9e-119 432.2 311 76.8
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 5.1e-119 431.8 292 78.4
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 8.8e-119 431.0 307 77.5
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 8.8e-119 431.0 368 66.8
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 1.1e-118 430.6 311 76.2
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 1.5e-118 430.3 311 75.9
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 2.6e-118 429.5 301 78.1
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.6e-118 429.5 364 66.8
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 2.6e-118 429.5 331 73.7
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 2.6e-118 429.5 355 68.5
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 4.4e-118 428.7 291 79.4
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 4.4e-118 428.7 289 79.9
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 5.7e-118 428.3 265 84.9
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 5.7e-118 428.3 301 77.4
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 9.7e-118 427.6 311 75.6
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 1.7e-117 426.8 367 68.4
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 2.2e-117 426.4 311 74.3
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 4.8e-117 425.2 265 84.2
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.0e-115 419.9 281 81.1
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 3.4e-115 419.1 326 71.8
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 2.2e-114 416.4 286 78.7
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 3.2e-113 412.5 268 81.0
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 3.2e-113 412.5 304 73.7
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 2.1e-112 409.8 328 73.5
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 2.1e-112 409.8 351 67.5
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 3.9e-111 405.6 291 75.9
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 5.7e-110 401.7 394 59.4
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.7e-109 400.2 295 74.2
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 5.3e-108 395.2 272 79.0
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 4.5e-107 392.1 392 61.5
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 4.5e-107 392.1 305 74.1
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 2.9e-106 389.4 392 61.2
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 2.9e-106 389.4 304 73.0
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 3.2e-105 386.0 324 67.3
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 4.7e-104 382.1 328 68.3
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.2e-102 377.5 310 69.0
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 1.5e-102 377.1 298 70.8
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.5e-102 377.1 282 72.3
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 7.5e-102 374.8 265 75.5
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 1.0e-98 364.4 261 74.3
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 2.9e-98 362.8 324 66.0
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 1.1e-97 360.9 258 73.6
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 3.0e-95 352.8 223 83.0
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 1.2e-91 340.9 359 58.5
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 5.5e-89 332.0 192 89.1
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 5.5e-89 332.0 357 56.3
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 1.6e-88 330.5 286 67.1
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 4.5e-83 312.4 260 67.3
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 7.3e-81 305.1 261 64.4
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 3.3e-73 279.6 305 57.7
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.2e-72 277.7 243 65.0
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 1.3e-69 267.7 266 56.8
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 7.0e-68 261.9 245 58.4
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 5.8e-62 242.3 306 51.6
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 7.5e-62 241.9 276 51.8
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 6.0e-59 232.3 271 55.4
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 8.9e-55 218.4 230 60.0
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 1.5e-54 217.6 164 71.3
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.9e-49 200.7 140 79.3
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 6.9e-47 192.2 135 77.0
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 6.2e-40 169.1 98 89.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 6.9e-39 165.6 142 70.4
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 1.9e-36 157.5 205 54.1
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 3.2e-36 156.8 93 88.2
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 1.5e-30 137.9 157 54.1
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 4.5e-30 136.3 157 53.5
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.8e-29 133.3 128 62.5
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.7e-19 100.5 80 66.2
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.3e-16 91.7 96 57.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 9.0e-15 85.5 60 73.3
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 2.2e-13 80.9 225 32.9
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 3.9e-10 70.1 47 76.6


User provided reference genes

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