Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 6.5e-112 409.5 466 100.0
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 4.9e-51 207.2 195 51.8
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 3.5e-49 201.1 154 61.0
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.5e-47 195.7 163 57.1
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 1.6e-46 192.2 212 49.1
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 2.1e-46 191.8 187 52.9
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 2.8e-46 191.4 189 51.3
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 7.5e-44 183.3 174 55.2
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 7.5e-44 183.3 178 52.8
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 9.9e-44 183.0 133 65.4
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.1e-41 175.3 208 47.6
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 2.1e-41 175.3 154 55.8
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 1.0e-40 172.9 153 55.6
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 1.1e-39 169.5 145 55.9
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 1.1e-39 169.5 149 57.0
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 3.3e-39 167.9 143 55.9
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 3.3e-39 167.9 193 45.1
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 5.6e-39 167.2 168 53.0
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 9.5e-39 166.4 144 55.6
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 2.1e-38 165.2 193 45.1
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 1.4e-37 162.5 197 45.2
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 2.4e-37 161.8 124 58.1
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 3.1e-37 161.4 184 48.4
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 6.8e-37 160.2 146 52.7
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 1.2e-36 159.5 162 50.6
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 1.5e-36 159.1 189 46.0
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 5.8e-36 157.1 164 47.0
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 5.8e-36 157.1 134 56.0
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 6.4e-35 153.7 146 52.7
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 3.2e-34 151.4 133 55.6
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 4.1e-34 151.0 200 42.5
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 5.4e-34 150.6 145 52.4
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 7.1e-34 150.2 151 47.7
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.2e-33 149.4 180 43.9
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 1.6e-33 149.1 191 45.5
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 3.5e-33 147.9 179 44.7
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 1.0e-32 146.4 156 50.0
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 1.9e-31 142.1 163 44.8
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 4.0e-29 134.4 134 47.8
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 9.0e-29 133.3 143 47.6
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 3.4e-28 131.3 203 39.9
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 7.6e-28 130.2 147 44.2
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 7.6e-28 130.2 143 46.9
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 9.9e-28 129.8 143 47.6
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 9.9e-28 129.8 169 42.6
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 9.9e-28 129.8 185 38.9
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.7e-27 129.0 156 42.3
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 3.8e-27 127.9 188 43.1
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 6.4e-27 127.1 171 41.5
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 6.4e-27 127.1 183 38.8
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 8.4e-27 126.7 134 50.7
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.1e-26 126.3 197 36.5
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.4e-26 125.9 143 46.9
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.9e-26 125.6 190 40.5
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 4.2e-26 124.4 171 42.1
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.2e-25 122.9 143 46.2
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.1e-25 122.1 135 48.9
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 2.7e-25 121.7 134 49.3
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 3.5e-25 121.3 133 44.4
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 3.5e-25 121.3 86 65.1
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.0e-24 119.8 205 35.6
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 3.9e-24 117.9 132 47.0
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 3.9e-24 117.9 134 46.3
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 1.1e-23 116.3 166 39.2
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 1.1e-23 116.3 166 39.2
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.5e-23 115.9 193 36.8
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 2.5e-23 115.2 193 35.8
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.5e-23 115.2 201 35.3
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.5e-23 115.2 201 35.3
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 2.5e-23 115.2 133 39.8
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 5.6e-23 114.0 134 46.3
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 7.3e-23 113.6 170 38.2
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.3e-22 112.8 200 34.5
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 1.3e-22 112.8 137 42.3
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 3.6e-22 111.3 175 36.6
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 6.2e-22 110.5 134 39.6
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 8.1e-22 110.2 198 38.4
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 2.4e-21 108.6 151 41.7
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 3.1e-21 108.2 190 36.3
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 9.0e-21 106.7 173 36.4
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 1.2e-20 106.3 132 42.4
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 1.5e-20 105.9 193 34.7
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 3.4e-20 104.8 134 44.0
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 9.9e-20 103.2 180 34.4
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.7e-19 102.4 128 40.6
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 2.2e-19 102.1 191 36.1
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.9e-19 101.7 131 39.7
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 6.4e-19 100.5 107 43.0
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.4e-18 98.6 112 42.9
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 3.2e-18 98.2 86 57.0
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 7.1e-18 97.1 194 34.0
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 9.3e-18 96.7 196 34.2
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 9.3e-18 96.7 196 34.2
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 5.1e-16 90.9 227 28.6
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 8.7e-16 90.1 133 33.8
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.5e-15 89.4 157 31.8
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 9.6e-15 86.7 79 50.6
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.8e-14 84.3 170 32.4
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 3.1e-13 81.6 169 35.5
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 4.0e-13 81.3 174 33.9
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 1.5e-12 79.3 154 34.4
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 5.8e-12 77.4 86 44.2
HanXRQChr17g0537401 Helianthus annuus HOM05D007358 ORTHO05D009117 8.4e-11 73.6 141 30.5
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 6.0e-09 67.4 89 42.7
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 1.0e-08 66.6 141 31.9
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 1.0e-08 66.6 141 31.9
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 3.9e-08 64.7 140 32.1
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 5.1e-08 64.3 130 32.3
GSVIVG01008360001 Vitis vinifera HOM05D007358 ORTHO05D009117 5.1e-08 64.3 145 29.7
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 8.7e-08 63.5 67 47.8
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 1.5e-07 62.8 148 29.7
CAN.G108.28 Capsicum annuum HOM05D007358 ORTHO05D009117 1.9e-07 62.4 136 28.7
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 1.9e-07 62.4 137 28.5
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 7.4e-07 60.5 128 30.5
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 1.3e-06 59.7 139 26.6
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 1.3e-06 59.7 130 28.5
Solyc11g073270.1 Solanum lycopersicum HOM05D007212 ORTHO05D009094 1.6e-06 59.3 126 31.0
Sopen11g030900 Solanum pennellii HOM05D007212 ORTHO05D009094 1.6e-06 59.3 126 31.0
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 2.8e-06 58.5 125 28.0
Cfa018449 Carpinus fangiana HOM05D007639 ORTHO05D009509 3.7e-06 58.2 123 32.5
SGA_v2.0_scaffold169G38601 Striga asiatica HOM05D007496 ORTHO05D009479 6.2e-06 57.4 131 31.3


User provided reference genes

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