Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.2e-130 469.9 260 100.0
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 4.3e-83 312.0 245 70.2
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 7.4e-83 311.2 245 70.6
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.6e-82 310.1 245 70.2
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 4.0e-81 305.4 246 68.3
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 2.9e-79 299.3 248 66.9
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.4e-78 297.0 234 72.2
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 2.5e-78 296.2 239 68.6
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 4.2e-78 295.4 258 64.3
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.2e-78 295.4 237 67.9
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 5.5e-78 295.0 220 70.5
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.6e-77 293.5 253 65.6
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.1e-77 293.1 245 66.5
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.1e-77 293.1 245 66.5
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 3.5e-77 292.4 245 68.6
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 7.9e-77 291.2 217 71.0
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.3e-76 290.4 245 65.3
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 8.7e-76 287.7 248 65.7
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 2.5e-75 286.2 220 69.1
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 8.2e-74 281.2 247 61.5
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.1e-73 280.8 244 63.1
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.1e-73 279.3 247 65.2
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 9.0e-73 277.7 250 63.6
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.2e-72 277.3 250 63.2
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.5e-72 276.9 232 66.4
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.3e-71 273.9 219 68.0
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 2.9e-71 272.7 243 63.8
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 1.4e-70 270.4 265 62.3
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.4e-70 270.4 237 65.0
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.5e-70 269.6 251 63.7
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.2e-70 269.2 269 61.7
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 5.5e-70 268.5 261 59.4
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 9.3e-70 267.7 202 69.3
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 7.9e-69 264.6 221 67.4
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 7.9e-69 264.6 219 67.1
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.0e-68 264.2 234 63.7
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.3e-68 263.1 249 61.0
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 2.3e-68 263.1 245 58.8
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 3.0e-68 262.7 245 61.6
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 5.1e-68 261.9 259 60.2
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 5.1e-68 261.9 250 62.0
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 6.7e-68 261.5 258 58.1
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 8.7e-68 261.2 271 60.5
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 8.7e-68 261.2 202 67.8
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.5e-67 260.4 228 63.6
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.9e-67 260.0 249 61.0
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.5e-67 259.6 226 63.3
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 4.3e-67 258.8 234 63.7
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.3e-67 258.8 258 57.4
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 4.3e-67 258.8 207 68.1
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 5.7e-67 258.5 237 62.4
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 5.7e-67 258.5 234 59.8
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 9.7e-67 257.7 222 62.2
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.3e-66 257.3 220 62.7
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.7e-66 256.9 248 60.5
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 1.7e-66 256.9 258 57.0
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.2e-66 256.5 248 59.7
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 4.8e-66 255.4 202 67.3
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.8e-66 255.4 219 63.0
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 4.8e-66 255.4 218 62.4
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 8.2e-66 254.6 233 61.8
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 8.2e-66 254.6 219 65.3
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 8.2e-66 254.6 223 62.8
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.1e-65 254.2 255 61.2
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.4e-65 253.8 217 65.4
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.4e-65 253.8 251 59.8
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-65 253.8 219 63.0
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 1.4e-65 253.8 207 68.1
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.8e-65 253.4 221 64.7
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.8e-65 253.4 221 64.7
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 2.4e-65 253.1 219 63.0
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.4e-65 253.1 219 62.6
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 3.1e-65 252.7 220 65.5
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.1e-65 252.7 219 62.6
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.1e-65 252.3 221 64.7
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 5.3e-65 251.9 252 61.9
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.3e-65 251.9 219 62.6
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 6.9e-65 251.5 221 62.4
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 6.9e-65 251.5 224 63.4
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 9.1e-65 251.1 207 67.1
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.6e-64 249.6 218 62.4
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 2.6e-64 249.6 221 65.6
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 3.4e-64 249.2 215 60.9
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.9e-64 248.4 247 59.1
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.0e-63 247.7 249 59.8
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 3.8e-63 245.7 221 63.8
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.8e-63 245.7 248 56.9
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 2.5e-62 243.0 218 62.4
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 4.2e-62 242.3 246 59.3
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 5.5e-62 241.9 243 60.9
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 5.5e-62 241.9 248 55.6
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 7.2e-62 241.5 240 59.6
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 7.2e-62 241.5 253 54.5
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 9.4e-62 241.1 240 55.8
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 2.1e-61 240.0 251 57.4
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 2.1e-61 240.0 251 57.4
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 2.1e-61 240.0 251 57.4
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 2.1e-61 240.0 223 60.1
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 2.1e-61 240.0 240 59.6
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.7e-61 239.6 220 59.5
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 4.6e-61 238.8 246 57.3
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.9e-60 235.7 237 59.9
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 6.7e-60 235.0 244 55.3
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.1e-59 234.2 218 60.1
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.3e-59 232.6 192 63.5
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 3.3e-59 232.6 244 55.3
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 3.3e-59 232.6 245 56.3
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 9.7e-59 231.1 247 55.9
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.7e-58 230.3 247 55.9
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 2.2e-58 229.9 239 55.6
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.8e-58 229.6 244 54.9
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.8e-58 229.6 244 56.1
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 2.8e-58 229.6 255 52.2
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 4.1e-57 225.7 264 51.1
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.9e-56 221.9 249 57.0
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.8e-55 219.2 265 55.1
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 3.8e-55 219.2 240 54.6
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.2e-53 214.2 197 63.5
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.1e-53 213.4 233 54.9
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 2.1e-53 213.4 233 54.9
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 6.1e-53 211.8 257 52.1
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.0e-52 211.1 201 60.2
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 5.2e-52 208.8 208 58.2
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 4.4e-51 205.7 230 54.3
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.7e-50 203.8 263 50.6
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 6.3e-50 201.8 251 50.6
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 4.1e-49 199.1 222 54.1
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 5.3e-49 198.7 240 49.2
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 5.3e-49 198.7 212 56.1
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.0e-47 194.5 222 55.9
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.7e-47 193.7 230 49.6
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 2.5e-46 189.9 222 51.4
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 4.2e-46 189.1 262 48.9
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.1e-45 186.8 222 54.1
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.7e-45 186.4 154 64.9
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 3.6e-45 186.0 218 49.5
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 8.0e-45 184.9 218 51.8
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 8.8e-44 181.4 200 57.0
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 3.7e-42 176.0 170 61.2
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 7.0e-41 171.8 148 60.1
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 2.2e-39 166.8 147 57.1
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 2.9e-39 166.4 190 51.6
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 5.0e-39 165.6 147 61.2
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.2e-37 161.0 249 46.6
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 3.6e-37 159.5 210 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 3.0e-36 156.4 179 45.3
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.4e-35 152.9 147 57.1
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 3.7e-34 149.4 183 47.5
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 3.8e-31 139.4 146 48.6
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 5.0e-31 139.0 214 39.7
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 4.7e-29 132.5 245 41.2
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 4.7e-29 132.5 226 41.6
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 5.2e-28 129.0 132 62.9
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 5.2e-28 129.0 132 62.9
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 2.0e-27 127.1 127 63.0
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.0e-27 127.1 125 57.6
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 1.7e-26 124.0 213 40.4
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 5.4e-25 119.0 218 41.7
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 1.3e-23 114.4 192 40.1
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 5.0e-23 112.5 219 34.2
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 7.3e-22 108.6 101 54.5
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 9.5e-22 108.2 87 69.0
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.2e-21 107.8 142 50.7
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 3.6e-21 106.3 227 34.8
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 2.3e-20 103.6 145 49.0
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.2e-19 101.3 69 66.7
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.9e-18 95.9 72 66.7
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.4e-17 94.4 76 61.8
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.1e-14 84.7 113 52.2
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 7.3e-14 82.0 165 38.2
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 4.4e-11 72.8 48 75.0
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 4.9e-10 69.3 56 66.1
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 9.2e-09 65.1 59 57.6
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 9.2e-09 65.1 137 33.6
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.7e-08 63.5 220 31.4
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 4.3e-06 56.2 47 61.7


User provided reference genes

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