Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2184 Cannabis sativa HOM05D006271 ORTHO05D008237 1.3e-175 619.8 360 100.0
CiPaw.13G067000 Carya illinoinensis HOM05D006271 ORTHO05D008237 1.8e-87 327.0 373 58.4
Cfa011797 Carpinus fangiana HOM05D006271 ORTHO05D008237 5.8e-86 322.0 287 63.4
Atru.chr5.2170 Acer truncatum HOM05D006271 ORTHO05D008237 1.3e-85 320.9 273 64.5
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 2.2e-85 320.1 287 63.1
RcHm_v2.0_Chr6g0268191 Rosa chinensis HOM05D006271 ORTHO05D008237 5.4e-84 315.5 286 60.8
Cpa.g.c32708 Carica papaya HOM05D006271 ORTHO05D008237 1.7e-82 310.5 286 60.5
MD11G1060500 Malus domestica HOM05D006271 ORTHO05D008237 8.6e-82 308.1 287 58.9
MD03G1058300 Malus domestica HOM05D006271 ORTHO05D008237 2.1e-80 303.5 298 57.4
ClCG08G003170 Citrullus lanatus HOM05D006271 ORTHO05D008237 2.8e-80 303.1 290 57.9
Ciclev10001595m.g Citrus clementina HOM05D006271 ORTHO05D008237 3.6e-80 302.8 356 56.2
GSVIVG01024608001 Vitis vinifera HOM05D006271 ORTHO05D008237 6.2e-80 302.0 286 59.1
FAN13G0829 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.8e-79 300.4 264 62.1
FAN18G4385 Fragaria x ananassa HOM05D006271 ORTHO05D008237 6.8e-79 298.5 264 61.7
TAR369G0029 Trochodendron aralioides HOM05D006271 ORTHO05D008237 2.0e-78 297.0 362 50.0
CsaV3_7G022840 Cucumis sativus L. HOM05D006271 ORTHO05D008237 2.6e-78 296.6 287 57.1
THA.LOC104800763 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 6.4e-77 292.0 288 58.3
FAN04G1993 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.4e-76 290.8 309 55.3
Prupe.6G045300 Prunus persica HOM05D006271 ORTHO05D008237 1.4e-76 290.8 290 56.6
Sed0013584 Sechium edule HOM05D006271 ORTHO05D008237 7.1e-76 288.5 279 58.8
Thhalv10016851m.g Eutrema salsugineum HOM05D006271 ORTHO05D008237 2.7e-75 286.6 286 56.6
VMungo0464G0054 Vigna mungo HOM05D006271 ORTHO05D008237 2.7e-75 286.6 272 59.2
Hma1.2p1_0613F.1_g189190 Hydrangea macrophylla HOM05D006271 ORTHO05D008237 1.3e-74 284.3 292 56.2
arahy.Tifrunner.gnm1.ann1.4PY88X Arachis hypogaea HOM05D006271 ORTHO05D008237 6.6e-74 282.0 272 57.0
Ca_26670_v3 Cicer arietinum L. HOM05D006271 ORTHO05D008237 8.7e-74 281.6 267 56.9
Nitab4.5_0002768g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 1.5e-73 280.8 287 56.1
TAR633G1937 Trochodendron aralioides HOM05D006271 ORTHO05D008237 3.3e-73 279.6 308 52.3
FAN08G2456 Fragaria x ananassa HOM05D006271 ORTHO05D008237 4.3e-73 279.3 309 54.4
Phvul.008G153700 Phaseolus vulgaris HOM05D006271 ORTHO05D008237 4.3e-73 279.3 267 57.7
Duzib168G1576 Durio zibethinus HOM05D006271 ORTHO05D008237 5.6e-73 278.9 367 55.6
Glyma.19G024000 Glycine max HOM05D006271 ORTHO05D008237 7.3e-73 278.5 357 53.2
arahy.Tifrunner.gnm1.ann1.0DE1FL Arachis hypogaea HOM05D006271 ORTHO05D008237 3.6e-72 276.2 286 54.5
Sp4g12860 Schrenkiella parvula HOM05D006271 ORTHO05D008237 3.6e-72 276.2 283 55.1
A05p15180 Brassica napus HOM05D006271 ORTHO05D008237 4.8e-72 275.8 288 55.6
Sc21g0004890 Simmondsia chinensis HOM05D006271 ORTHO05D008237 8.1e-72 275.0 360 53.9
Carub.0008s0813 Capsella rubella HOM05D006271 ORTHO05D008237 1.1e-71 274.6 290 55.2
Gorai.003G151300 Gossypium raimondii HOM05D006271 ORTHO05D008237 1.4e-71 274.2 271 57.2
Sopen06g033780 Solanum pennellii HOM05D006271 ORTHO05D008237 1.8e-71 273.9 288 55.2
Eucgr.K01366 Eucalyptus grandis HOM05D006271 ORTHO05D008237 4.0e-71 272.7 287 54.7
Nitab4.5_0003270g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 9.0e-71 271.6 287 54.0
CSS0050408 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 1.2e-70 271.2 285 55.8
Gohir.D03G144000 Gossypium hirsutum HOM05D006271 ORTHO05D008237 7.6e-70 268.5 267 56.9
Thecc.09G360000 Theobroma cacao HOM05D006271 ORTHO05D008237 9.9e-70 268.1 360 52.5
TWI79G1094 Tripterygium wilfordii HOM05D006271 ORTHO05D008237 1.3e-69 267.7 358 50.3
PGR004G1333 Punica granatum HOM05D006271 ORTHO05D008237 2.2e-69 266.9 272 55.5
PGSC0003DMG400030380 Solanum tuberosum HOM05D006271 ORTHO05D008237 2.9e-69 266.5 303 51.2
Lalb_Chr22g0360771 Lupinus albus HOM05D006271 ORTHO05D008237 3.8e-69 266.2 348 54.6
QL01p025615 Quercus lobata HOM05D006271 ORTHO05D008237 3.8e-69 266.2 494 38.9
Aa31LG5G6440 Aethionema arabicum HOM05D006271 ORTHO05D008237 4.9e-69 265.8 277 56.0
Gohir.A03G024500 Gossypium hirsutum HOM05D006271 ORTHO05D008237 6.4e-69 265.4 267 56.9
Lj1g0015465 Lotus japonicus HOM05D006271 ORTHO05D008237 8.4e-69 265.0 252 59.5
TPR.G1139 Trifolium pratense HOM05D006271 ORTHO05D008237 8.4e-69 265.0 256 55.9
Aqoxy4G02154 Aquilegia oxysepala HOM05D006271 ORTHO05D008237 1.1e-68 264.6 287 50.2
BcaC02g11116 Brassica carinata HOM05D006271 ORTHO05D008237 1.9e-68 263.8 267 56.6
COL.COLO4_11178 Corchorus olitorius HOM05D006271 ORTHO05D008237 2.4e-68 263.5 283 54.1
Oeu032478.1 Olea europaea HOM05D006271 ORTHO05D008237 4.2e-68 262.7 294 51.0
Rhsim13G0062500 Rhododendron simsii HOM05D006271 ORTHO05D008237 4.2e-68 262.7 282 55.0
AT2G30280 Arabidopsis thaliana HOM05D006271 ORTHO05D008237 7.1e-68 261.9 287 53.3
Psat6g224880 Pisum sativum HOM05D006271 ORTHO05D008237 9.3e-68 261.5 359 47.1
BcaB02g10312 Brassica carinata HOM05D006271 ORTHO05D008237 1.6e-67 260.8 272 55.5
CSS0007493 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 1.6e-67 260.8 354 57.1
CAN.G1095.29 Capsicum annuum HOM05D006271 ORTHO05D008237 3.5e-67 259.6 287 52.3
Medtr7g033700 Medicago truncatula HOM05D006271 ORTHO05D008237 3.5e-67 259.6 363 45.7
AL4G25130 Arabidopsis lyrata HOM05D006271 ORTHO05D008237 1.3e-66 257.7 290 52.1
Manes.12G056300 Manihot esculenta HOM05D006271 ORTHO05D008237 1.3e-66 257.7 349 49.9
Potri.019G126500 Populus trichocarpa HOM05D006271 ORTHO05D008237 1.7e-66 257.3 298 51.3
BraA05t20437Z Brassica rapa HOM05D006271 ORTHO05D008237 2.3e-66 256.9 365 54.8
BolC4t23562H Brassica oleracea HOM05D006271 ORTHO05D008237 1.5e-65 254.2 279 53.8
HanXRQChr08g0228551 Helianthus annuus HOM05D006271 ORTHO05D008237 1.5e-65 254.2 294 51.4
FvH4_5g27270 Fragaria vesca HOM05D006271 ORTHO05D008237 4.3e-65 252.7 218 63.3
Lsat_1_v5_gn_9_14460 Lactuca sativa HOM05D006271 ORTHO05D008237 5.6e-65 252.3 283 51.6
PSO170G5827 Papaver somniferum HOM05D006271 ORTHO05D008237 7.3e-65 251.9 286 51.4
Sabra19G0124300 Salix brachista HOM05D006271 ORTHO05D008237 7.3e-65 251.9 299 49.8
Medtr8g063090 Medicago truncatula HOM05D006271 ORTHO05D008237 1.3e-64 251.1 351 55.0
PSO017G5241 Papaver somniferum HOM05D006271 ORTHO05D008237 1.3e-64 251.1 285 51.6
MBI15_g26246_MAGBIO Magnolia biondii HOM05D006271 ORTHO05D008237 8.1e-64 248.4 277 50.5
DCAR_018792 Daucus carota HOM05D006271 ORTHO05D008237 1.4e-63 247.7 355 51.3
CARHR123600 Cardamine hirsuta HOM05D006271 ORTHO05D008237 1.8e-63 247.3 360 52.5
Cc01_g15040 Coffea canephora HOM05D006271 ORTHO05D008237 1.5e-62 244.2 280 52.5
Dinv12252 Davidia involucrata HOM05D006271 ORTHO05D008237 1.5e-62 244.2 229 60.3
Sabra19G0130300 Salix brachista HOM05D006271 ORTHO05D008237 4.5e-62 242.7 294 49.3
ECA247G1693 Erigeron canadensis HOM05D006271 ORTHO05D008237 2.2e-61 240.4 268 51.9
SGA_v2.0_scaffold77G25374 Striga asiatica HOM05D006271 ORTHO05D008237 3.8e-61 239.6 250 54.4
EL10Ac7g15870 Beta vulgaris HOM05D006271 ORTHO05D008237 1.1e-60 238.0 275 49.5
PSO339G2991 Papaver somniferum HOM05D006271 ORTHO05D008237 1.6e-59 234.2 327 45.3
Medtr7g033685 Medicago truncatula HOM05D006271 ORTHO05D008237 2.7e-59 233.4 267 50.9
Peaxi162Scf00390g00528 Petunia axillaris HOM05D006271 ORTHO05D008237 8.7e-58 228.4 280 49.3
THA.LOC104800777 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 8.7e-58 228.4 270 51.1
C04p20240 Brassica napus HOM05D006271 ORTHO05D008237 3.3e-57 226.5 234 55.1
unitig_60.g25562 Utricularia gibba HOM05D006271 ORTHO05D008237 3.1e-55 219.9 269 47.6
Migut.N00750 Erythranthe guttata HOM05D006271 ORTHO05D008237 6.9e-55 218.8 281 45.6
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 1.2e-54 218.0 353 49.9
Os12g0110300 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 6.5e-53 212.2 290 42.4
Hund18965 Selenicereus undatus HOM05D006271 ORTHO05D008237 6.5e-53 212.2 358 43.6
vmacro02904 Vaccinium macrocarpon HOM05D006271 ORTHO05D008237 1.4e-52 211.1 280 47.9
CSS0039557 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 9.3e-52 208.4 347 42.7
SalBow2G1290 Salvia bowleyana HOM05D006271 ORTHO05D008237 4.6e-51 206.1 326 41.1
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 7.9e-51 205.3 356 40.4
Os11g0110066 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 7.9e-51 205.3 271 42.8
HPP92_015428 Vanilla planifolia HOM05D006271 ORTHO05D008237 6.7e-50 202.2 272 44.9
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 3.3e-49 199.9 222 50.0
Lj1g0018317 Lotus japonicus HOM05D006271 ORTHO05D008237 7.4e-49 198.7 416 37.7
AUR62009716 Chenopodium quinoa HOM05D006271 ORTHO05D008237 2.9e-45 186.8 359 37.9
Dinv44551 Davidia involucrata HOM05D006271 ORTHO05D008237 5.5e-44 182.6 168 58.9
QL01p025639 Quercus lobata HOM05D006271 ORTHO05D008237 2.1e-43 180.6 153 61.4
TPR.G1080 Trifolium pratense HOM05D006271 ORTHO05D008237 2.3e-42 177.2 242 43.8
Nn2g11075 Nelumbo nucifera HOM05D006271 ORTHO05D008237 3.4e-38 163.3 208 47.6
SEGI_17267 Sequoiadendron giganteum HOM05D006271 ORTHO05D008237 1.2e-35 154.8 256 39.1
CDE04G1879 Ceratophyllum demersum HOM05D006271 ORTHO05D008237 1.0e-34 151.8 310 37.4
unitig_60.g25741 Utricularia gibba HOM05D006271 ORTHO05D008237 2.0e-33 147.5 243 37.0
Ah.07g202380 Amaranthus hybridus HOM05D006271 ORTHO05D008237 1.4e-28 131.3 205 42.4
Pp3c12_13690 Physcomitrium patens HOM05D006271 ORTHO05D008237 1.0e-26 125.2 296 34.1
AagrBONN_evm.TU.Sc2ySwM_344.4002 Anthoceros agrestis HOM05D006271 ORTHO05D008237 1.7e-24 117.9 289 34.9
Zm00001eb404980 Zea mays HOM05D006271 ORTHO05D008237 1.7e-24 117.9 195 36.9
Ah.07g202370 Amaranthus hybridus HOM05D006271 ORTHO05D000898 1.2e-22 111.7 91 61.5
PSO384G0354 Papaver somniferum HOM05D006271 ORTHO05D008237 7.7e-22 109.0 93 63.4
SHI19233 Sapria himalayana HOM05D006271 ORTHO05D008237 5.0e-21 106.3 157 41.4
Mapoly0055s0007 Marchantia polymorpha HOM05D006271 ORTHO05D008237 4.2e-20 103.2 256 33.2
BcaB06g28355 Brassica carinata HOM05D006271 ORTHO05D008237 2.2e-13 80.9 80 55.0
BolC4t27428H Brassica oleracea HOM05D006271 ORTHO05D023853 1.9e-12 77.8 202 38.6
PSO170G2099 Papaver somniferum HOM05D006271 ORTHO05D008237 1.9e-12 77.8 219 30.6
C04p59170 Brassica napus HOM05D006271 ORTHO05D023853 9.4e-12 75.5 207 37.2
PSO017G3993 Papaver somniferum HOM05D006271 ORTHO05D008237 3.6e-11 73.6 217 29.5
QL10p056779 Quercus lobata HOM05D000009 ORTHO05D000008 7.0e-07 59.3 75 52.0


User provided reference genes

Program Settings