Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 0.0e+00 1113.6 549 100.0
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 2.1e-244 849.0 551 76.2
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 5.6e-242 840.9 517 78.1
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 6.2e-241 837.4 552 75.0
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 7.6e-239 830.5 500 79.6
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.0e-238 830.1 577 72.1
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 2.2e-238 828.9 553 75.8
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 2.9e-238 828.6 517 78.9
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 8.4e-238 827.0 551 73.9
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 7.1e-237 823.9 547 73.7
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.2e-236 823.2 550 73.5
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 8.7e-235 817.0 466 83.0
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.1e-234 816.6 547 73.1
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 5.7e-234 814.3 551 73.5
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 1.3e-233 813.1 465 82.8
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 6.3e-233 810.8 550 73.3
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 4.1e-232 808.1 496 79.2
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.1e-232 808.1 496 79.2
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 5.3e-232 807.7 466 81.1
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 4.5e-231 804.7 544 72.8
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.3e-230 803.1 496 78.6
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 5.0e-230 801.2 551 71.5
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.5e-229 798.9 466 81.1
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 4.2e-229 798.1 542 71.2
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.2e-229 798.1 552 71.0
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 4.2e-229 798.1 634 65.5
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 4.2e-229 798.1 555 71.7
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 5.5e-229 797.7 543 72.6
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 5.5e-229 797.7 465 80.2
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 7.2e-229 797.3 552 71.4
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 1.6e-228 796.2 555 72.4
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 1.4e-227 793.1 550 71.1
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.4e-227 793.1 463 81.4
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 2.3e-227 792.3 460 81.5
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 3.0e-227 792.0 467 79.7
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 9.7e-226 786.9 571 68.8
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 2.8e-225 785.4 470 78.5
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 6.3e-225 784.3 529 72.8
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 9.1e-224 780.4 546 70.1
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 2.6e-223 778.9 469 78.5
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 3.4e-223 778.5 521 72.4
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 5.9e-223 777.7 474 78.1
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 5.9e-223 777.7 465 78.7
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.0e-222 776.9 463 78.6
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.3e-222 776.5 474 78.1
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 2.2e-222 775.8 503 73.8
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 2.2e-222 775.8 527 71.3
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 2.9e-222 775.4 547 69.8
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.1e-221 773.5 509 73.9
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.5e-221 772.3 469 77.6
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 5.5e-221 771.2 475 76.2
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 7.2e-221 770.8 513 71.9
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 9.4e-221 770.4 467 79.0
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 1.2e-220 770.0 475 76.2
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.6e-220 769.6 490 77.3
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 3.6e-220 768.5 490 74.1
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 1.4e-219 766.5 619 63.2
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 1.4e-219 766.5 495 73.9
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 1.8e-219 766.1 505 73.7
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 1.8e-219 766.1 469 77.4
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 3.0e-219 765.4 461 78.1
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 5.1e-219 764.6 503 73.6
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 8.8e-219 763.8 526 71.9
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 8.8e-219 763.8 462 77.3
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.5e-218 763.1 547 70.2
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 4.4e-218 761.5 506 72.7
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 4.4e-218 761.5 490 74.5
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 5.7e-218 761.1 515 72.2
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 9.7e-218 760.4 490 74.7
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.3e-217 760.0 516 70.9
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 2.2e-217 759.2 493 72.8
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 2.8e-217 758.8 490 73.3
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 3.7e-217 758.4 479 75.4
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 5.3e-216 754.6 466 77.5
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 7.0e-216 754.2 464 77.2
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 7.0e-216 754.2 492 74.4
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 2.0e-215 752.7 576 65.8
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 3.4e-215 751.9 469 75.7
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 4.5e-215 751.5 465 75.3
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 1.3e-214 750.0 470 75.3
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.1e-213 746.9 511 72.4
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 1.1e-213 746.9 492 73.6
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 1.1e-213 746.9 492 73.8
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 1.4e-213 746.5 514 71.8
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.9e-213 746.1 492 73.6
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 4.2e-213 745.0 533 68.7
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 1.2e-212 743.4 476 75.6
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 1.8e-211 739.6 443 78.3
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 3.9e-211 738.4 461 75.3
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 3.3e-210 735.3 467 73.4
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 9.7e-210 733.8 491 72.7
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 1.1e-208 730.3 443 76.5
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 4.5e-207 724.9 628 59.9
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 7.7e-207 724.2 555 67.9
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 8.5e-206 720.7 467 72.6
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.5e-202 709.9 436 75.2
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 5.0e-198 694.9 488 67.8
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 2.5e-197 692.6 421 76.5
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.2e-196 690.3 488 67.6
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.6e-196 688.7 466 71.5
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 4.7e-196 688.3 421 76.5
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 1.3e-193 680.2 458 69.7
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 1.7e-193 679.9 469 72.1
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 1.1e-189 667.2 461 66.8
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 4.7e-188 661.8 475 67.2
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 6.1e-188 661.4 477 67.5
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 1.8e-187 659.8 441 71.9
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 1.9e-181 639.8 421 72.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 7.3e-181 637.9 464 64.7
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 1.2e-180 637.1 455 66.8
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 1.9e-176 623.2 466 62.7
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 7.0e-176 621.3 464 64.7
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 3.9e-174 615.5 464 64.2
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 3.3e-173 612.5 459 65.1
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.5e-170 603.6 456 64.5
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.4e-168 595.1 356 78.1
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.2e-167 594.0 460 63.9
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 2.7e-167 592.8 465 63.9
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 2.3e-166 589.7 458 62.4
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 8.3e-161 571.2 483 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 9.2e-152 541.2 468 56.8
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.0e-138 496.9 321 73.5
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 7.6e-138 495.0 355 69.0
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 1.4e-120 437.6 299 72.2
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 1.6e-119 434.1 502 47.4
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 5.1e-118 429.1 418 51.9
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.8e-116 423.3 316 66.5
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 4.8e-116 422.5 261 75.1
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.7e-103 379.4 260 68.5
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 2.1e-95 354.0 336 56.2
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 3.2e-88 330.1 214 68.7
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 7.2e-88 328.9 255 60.0
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 1.2e-87 328.2 197 78.7
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 2.1e-79 300.8 242 58.7
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 4.7e-71 273.1 222 67.6
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 2.7e-58 230.7 162 66.0
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 9.5e-56 222.2 144 76.4
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.4e-43 181.8 113 75.2
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 1.7e-41 174.9 157 58.6
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 6.6e-41 172.9 101 83.2
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 8.6e-41 172.6 175 57.1
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.2e-36 157.9 115 67.8
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 4.9e-36 156.8 91 75.8
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.2e-34 152.1 152 53.9
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 4.9e-20 103.6 112 53.6
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 1.8e-14 85.1 60 58.3
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 6.9e-14 83.2 53 77.4
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 6.9e-14 83.2 53 77.4
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 1.7e-12 78.6 57 64.9
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 2.5e-11 74.7 48 77.1
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 4.3e-08 63.9 58 63.8
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 2.8e-07 61.2 64 53.1
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 5.3e-06 57.0 182 26.4
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 6.9e-06 56.6 36 72.2


User provided reference genes

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